DegronMD: protein-targeted degradation, mutation and drug response to degrons
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CPH
CGC
Degron:
VKTTS
Uniprot ID:
O15075
Source protein:
Serine/threonine-protein kinase DCLK1
Source gene:
DCLK1
Class:
DEG_SPOP_SBC_1
Location:
154:158
E3 ligase:
SPOP
DEGRON score:
0.9667
ASA_SCORE:
83.92
COIL:
0.8614
CONS_SCORE:
0.428
DSS_SCORE:
0.3678
HELIX:
0.094
FCONS_SCORE:
0.9916
RIG_SCORE:
0.7912
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.A167T
TCGA-17-Z054
LUAD
TCGA
VKTTS
DEG_SPOP_SBC_1
0.0833
p.K144R
TCGA-46-6026
LUSC
TCGA
VKTTS
DEG_SPOP_SBC_1
0.1667
p.K144R
TCGA-CG-4466
STAD
TCGA
VKTTS
DEG_SPOP_SBC_1
0.1667
p.K144R
DO233708
GACA
ICGC
VKTTS
DEG_SPOP_SBC_1
0.1667
p.K144R
DO26740
LUSC
ICGC
VKTTS
DEG_SPOP_SBC_1
0.1667
p.K144R
DO38695
STAD
ICGC
VKTTS
DEG_SPOP_SBC_1
0.1667
p.K144N
TCGA-AX-A05Z
UCEC
TCGA
VKTTS
DEG_SPOP_SBC_1
0.1667
p.K144N
DO40884
UCEC
ICGC
VKTTS
DEG_SPOP_SBC_1
0.1667
p.R161W
TCGA-BR-8678
STAD
TCGA
VKTTS
DEG_SPOP_SBC_1
0.25
p.R161W
DO47957
STAD
ICGC
VKTTS
DEG_SPOP_SBC_1
0.25
p.N149K
TCGA-CG-4304
STAD
TCGA
VKTTS
DEG_SPOP_SBC_1
0.1944
p.N149K
DO38615
STAD
ICGC
VKTTS
DEG_SPOP_SBC_1
0.1944
p.R161Q
TCGA-HT-7684
LGG
TCGA
VKTTS
DEG_SPOP_SBC_1
0.25
p.R161Q
DO22121
LGG
ICGC
VKTTS
DEG_SPOP_SBC_1
0.25
p.S158W
TCGA-IN-A6RO
STAD
TCGA
VKTTS
DEG_SPOP_SBC_1
0.7874
p.S158W
DO51740
STAD
ICGC
VKTTS
DEG_SPOP_SBC_1
0.7874
p.S158W
SIDM00688
B-Cell Non-Hodgkin's Lymphoma
GDSC
VKTTS
DEG_SPOP_SBC_1
0.7874
p.S158W
ACH-002253
Lymphoma
CCLE
VKTTS
DEG_SPOP_SBC_1
0.7874
p.S158W
JSC-1
haematopoietic_and_lymphoid_tissue
COSMIC
VKTTS
DEG_SPOP_SBC_1
0.7874
p.K144T
DO233214
GACA
ICGC
VKTTS
DEG_SPOP_SBC_1
0.1667
p.S158L
DO222521
MELA
ICGC
VKTTS
DEG_SPOP_SBC_1
0.7667
p.A162V
SIDM00216
Colorectal Carcinoma
GDSC
VKTTS
DEG_SPOP_SBC_1
0.2222
p.A162V
ACH-000989
Colon/Colorectal Cancer
CCLE
VKTTS
DEG_SPOP_SBC_1
0.2222
p.A162V
SNU-175
large_intestine
COSMIC
VKTTS
DEG_SPOP_SBC_1
0.2222
p.S165T
SIDM00551
Esophageal Squamous Cell Carcinoma
GDSC
VKTTS
DEG_SPOP_SBC_1
0.1389
p.S165T
ACH-002263
Esophageal Cancer
CCLE
VKTTS
DEG_SPOP_SBC_1
0.1389
p.S165T
KYSE-220
oesophagus
COSMIC
VKTTS
DEG_SPOP_SBC_1
0.1389
p.A167V
SIDM01609
Endometrial Carcinoma
GDSC
VKTTS
DEG_SPOP_SBC_1
0.0833
p.V154I
ACH-000966
Ovarian Cancer
CCLE
VKTTS
DEG_SPOP_SBC_1
0.7076
p.V154I
ACH-001063
Ovarian Cancer
CCLE
VKTTS
DEG_SPOP_SBC_1
0.7076
p.N153S
ACH-001664
Gastric Cancer
CCLE
VKTTS
DEG_SPOP_SBC_1
0.3056
p.F167V
SNU-81
large_intestine
COSMIC
VKTTS
DEG_SPOP_SBC_1
0.0833
Drug responses associated with DCLK1 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of VKTTS
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O15075
Serine/threonine-protein kinase DCLK1
DEG_SPOP_SBC_1
154:158
VKTTS
SPOP
0.9667
More...
P19838
Nuclear factor NF-kappa-B p105 subunit
DEG_SPOP_SBC_1
895:899
VKTTS
SPOP
0.9613
More...
Q14151
Scaffold attachment factor B2
DEG_SPOP_SBC_1
585:589
VKTTS
SPOP
0.8543
More...
Q8NEV8
Exophilin-5
DEG_SPOP_SBC_1
1229:1233
VKTTS
SPOP
0.8939
More...
Q5T7N2
LINE-1 type transposase domain-containing protein 1
DEG_SPOP_SBC_1
492:496
VKTTS
SPOP
0.9534
More...
Q8WWW8
GRB2-associated-binding protein 3
DEG_SPOP_SBC_1
88:92
VKTTS
SPOP
0.6909
More...