DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
VKTTS
Uniprot ID:
P19838
Source protein:
Nuclear factor NF-kappa-B p105 subunit
Source gene:
NFKB1
Class:
DEG_SPOP_SBC_1
Location:
895:899
E3 ligase:
SPOP
DEGRON score:
0.9613
ASA_SCORE:
99.56
COIL:
0.8954
CONS_SCORE:
0.1558
DSS_SCORE:
0.4659
HELIX:
0.0694
FCONS_SCORE:
0.5854
RIG_SCORE:
0.6592
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.S893P
TCGA-19-1388
GBM
TCGA
VKTTS
DEG_SPOP_SBC_1
0.7222
p.S893Y
TCGA-19-1388
GBM
TCGA
VKTTS
DEG_SPOP_SBC_1
0.7222
p.S908L
TCGA-A5-A2K3
UCEC
TCGA
VKTTS
DEG_SPOP_SBC_1
0.0833
p.S908L
TCGA-FS-A1ZZ
SKCM
TCGA
VKTTS
DEG_SPOP_SBC_1
0.0833
p.S904L
TCGA-AG-A002
READ
TCGA
VKTTS
DEG_SPOP_SBC_1
0.1944
p.S893F
TCGA-AO-A0JD
BRCA
TCGA
VKTTS
DEG_SPOP_SBC_1
0.7222
p.P909H
TCGA-AX-A06F
UCEC
TCGA
VKTTS
DEG_SPOP_SBC_1
0.0556
p.A902D
TCGA-UF-A7JO
HNSC
TCGA
VKTTS
DEG_SPOP_SBC_1
0.25
p.Q901E
TCGA-VS-A9UR
CESC
TCGA
VKTTS
DEG_SPOP_SBC_1
0.2778
p.S892F
DO2860
BRCA
ICGC
VKTTS
DEG_SPOP_SBC_1
0.6944
p.Q900E
DO219739
CESC
ICGC
VKTTS
DEG_SPOP_SBC_1
0.3056
p.S892Y
DO13797
GBM
ICGC
VKTTS
DEG_SPOP_SBC_1
0.6944
p.S892P
DO13797
GBM
ICGC
VKTTS
DEG_SPOP_SBC_1
0.6944
p.S892P
DO229245
THCA
ICGC
VKTTS
DEG_SPOP_SBC_1
0.6944
p.A901D
DO219088
HNSC
ICGC
VKTTS
DEG_SPOP_SBC_1
0.2778
p.A891S
DO228952
LICA
ICGC
VKTTS
DEG_SPOP_SBC_1
0.2222
p.P894L
DO220852
MELA
ICGC
VKTTS
DEG_SPOP_SBC_1
0.3056
p.S907L
DO37412
SKCM
ICGC
VKTTS
DEG_SPOP_SBC_1
0.5556
p.S907L
DO43899
UCEC
ICGC
VKTTS
DEG_SPOP_SBC_1
0.5556
p.P908H
DO41752
UCEC
ICGC
VKTTS
DEG_SPOP_SBC_1
0.0833
p.A885G
SIDM01368
Gastric Carcinoma
GDSC
VKTTS
DEG_SPOP_SBC_1
0.0556
p.A885G
ACH-000255
Gastric Cancer
CCLE
VKTTS
DEG_SPOP_SBC_1
0.0556
p.S893N
ACH-000999
Colon/Colorectal Cancer
CCLE
VKTTS
DEG_SPOP_SBC_1
0.7222
p.V896M
ACH-001377
Pancreatic Cancer
CCLE
VKTTS
DEG_SPOP_SBC_1
0.7208
Drug responses associated with NFKB1 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of VKTTS
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O15075
Serine/threonine-protein kinase DCLK1
DEG_SPOP_SBC_1
154:158
VKTTS
SPOP
0.9667
More...
P19838
Nuclear factor NF-kappa-B p105 subunit
DEG_SPOP_SBC_1
895:899
VKTTS
SPOP
0.9613
More...
Q14151
Scaffold attachment factor B2
DEG_SPOP_SBC_1
585:589
VKTTS
SPOP
0.8543
More...
Q8NEV8
Exophilin-5
DEG_SPOP_SBC_1
1229:1233
VKTTS
SPOP
0.8939
More...
Q5T7N2
LINE-1 type transposase domain-containing protein 1
DEG_SPOP_SBC_1
492:496
VKTTS
SPOP
0.9534
More...
Q8WWW8
GRB2-associated-binding protein 3
DEG_SPOP_SBC_1
88:92
VKTTS
SPOP
0.6909
More...