DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
VKTTS
Uniprot ID:
Q14151
Source protein:
Scaffold attachment factor B2
Source gene:
SAFB2
Class:
DEG_SPOP_SBC_1
Location:
585:589
E3 ligase:
SPOP
DEGRON score:
0.8543
ASA_SCORE:
96.26
COIL:
0.8892
CONS_SCORE:
0.355
DSS_SCORE:
0.6533
HELIX:
0.0524
FCONS_SCORE:
0.87
RIG_SCORE:
0.6994
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.S596F
TCGA-GN-A266
SKCM
TCGA
VKTTS
DEG_SPOP_SBC_1
0.1389
p.S596F
DO37432
SKCM
ICGC
VKTTS
DEG_SPOP_SBC_1
0.1389
p.S595R
DO229006
LICA
ICGC
VKTTS
DEG_SPOP_SBC_1
0.1667
p.S591F
DO229224
THCA
ICGC
VKTTS
DEG_SPOP_SBC_1
0.7222
p.R590K
SIDM00259
Neuroblastoma
GDSC
VKTTS
DEG_SPOP_SBC_1
0.3056
p.R590K
ACH-002278
Neuroblastoma
CCLE
VKTTS
DEG_SPOP_SBC_1
0.3056
p.R590K
NB10
autonomic_ganglia
COSMIC
VKTTS
DEG_SPOP_SBC_1
0.3056
p.S577L
SIDM00217
Colorectal Carcinoma
GDSC
VKTTS
DEG_SPOP_SBC_1
0.1111
p.S577L
ACH-000999
Colon/Colorectal Cancer
CCLE
VKTTS
DEG_SPOP_SBC_1
0.1111
p.S577L
SNU-1040
large_intestine
COSMIC
VKTTS
DEG_SPOP_SBC_1
0.1111
Drug responses associated with SAFB2 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of VKTTS
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O15075
Serine/threonine-protein kinase DCLK1
DEG_SPOP_SBC_1
154:158
VKTTS
SPOP
0.9667
More...
P19838
Nuclear factor NF-kappa-B p105 subunit
DEG_SPOP_SBC_1
895:899
VKTTS
SPOP
0.9613
More...
Q14151
Scaffold attachment factor B2
DEG_SPOP_SBC_1
585:589
VKTTS
SPOP
0.8543
More...
Q8NEV8
Exophilin-5
DEG_SPOP_SBC_1
1229:1233
VKTTS
SPOP
0.8939
More...
Q5T7N2
LINE-1 type transposase domain-containing protein 1
DEG_SPOP_SBC_1
492:496
VKTTS
SPOP
0.9534
More...
Q8WWW8
GRB2-associated-binding protein 3
DEG_SPOP_SBC_1
88:92
VKTTS
SPOP
0.6909
More...