DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
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Degron:
VKTTS
Uniprot ID:
Q8WWW8
Source protein:
GRB2-associated-binding protein 3
Source gene:
GAB3
Class:
DEG_SPOP_SBC_1
Location:
88:92
E3 ligase:
SPOP
DEGRON score:
0.6909
ASA_SCORE:
53.82
COIL:
0.4936
CONS_SCORE:
0.5778
DSS_SCORE:
0.0215
HELIX:
0.0062
FCONS_SCORE:
1.1664
RIG_SCORE:
0.9513
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.V85M
TCGA-AZ-6601
COAD
TCGA
VKTTS
DEG_SPOP_SBC_1
0.25
p.V85M
DO8119
COAD
ICGC
VKTTS
DEG_SPOP_SBC_1
0.25
p.E79K
TCGA-D3-A8GI
SKCM
TCGA
VKTTS
DEG_SPOP_SBC_1
0.0833
p.E79K
DO229462
SKCA
ICGC
VKTTS
DEG_SPOP_SBC_1
0.0833
p.E79K
DO50284
SKCM
ICGC
VKTTS
DEG_SPOP_SBC_1
0.0833
p.E79Q
TCGA-FJ-A3ZF
BLCA
TCGA
VKTTS
DEG_SPOP_SBC_1
0.0833
p.E79Q
DO500
BLCA
ICGC
VKTTS
DEG_SPOP_SBC_1
0.0833
p.R93S
DO229019
LICA
ICGC
VKTTS
DEG_SPOP_SBC_1
0.3056
p.R93C
DO50749
LICA
ICGC
VKTTS
DEG_SPOP_SBC_1
0.3056
p.F95S
ACH-001991
Primary
CCLE
VKTTS
DEG_SPOP_SBC_1
0.25
Drug responses associated with GAB3 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of VKTTS
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O15075
Serine/threonine-protein kinase DCLK1
DEG_SPOP_SBC_1
154:158
VKTTS
SPOP
0.9667
More...
P19838
Nuclear factor NF-kappa-B p105 subunit
DEG_SPOP_SBC_1
895:899
VKTTS
SPOP
0.9613
More...
Q14151
Scaffold attachment factor B2
DEG_SPOP_SBC_1
585:589
VKTTS
SPOP
0.8543
More...
Q8NEV8
Exophilin-5
DEG_SPOP_SBC_1
1229:1233
VKTTS
SPOP
0.8939
More...
Q5T7N2
LINE-1 type transposase domain-containing protein 1
DEG_SPOP_SBC_1
492:496
VKTTS
SPOP
0.9534
More...
Q8WWW8
GRB2-associated-binding protein 3
DEG_SPOP_SBC_1
88:92
VKTTS
SPOP
0.6909
More...