Gene Page: RBPMS

Summary
GeneID  11030
Symbol  RBPMS
Synonyms  HERMES
Description  RNA binding protein with multiple splicing
See related  HGNC:19097|MIM:601558|Ensembl:ENSG00000157110|HPRD:11870|
Locus tag  -
Gene type  protein-coding
Map location  8p12-p11
 
Gene in Data Sources
Gene set name Method of gene set Evidence Info
GSMA_IIEgenome scan meta-analysis (European-ancestry samples)Psr: 0.00057 
GSMA_IIAgenome scan meta-analysis (All samples)Psr: 0.03086 
NetworkShortest path distance of core genes in the Human protein-protein interaction networkContribution to shortest path in PPI network: 0.039 
 
General Gene Expression (microarray) ?
 
Gene Expression in Brain Regions (new)
 
Top co-expressed genes in Brain Regions (new)
GenePearson's Correlation Spearman's Correlation
Top 10 positively co-expressed genes
RBM190.900.90
C17orf690.890.89
SRCAP0.890.88
TNRC6A0.890.90
SETD1A0.890.88
BAT20.890.88
GIGYF10.880.91
TCOF10.880.89
RBM280.880.87
PCNT0.880.90
Top 10 negatively co-expressed genes
AF347015.31-0.66-0.70
AF347015.21-0.64-0.77
B2M-0.64-0.66
AF347015.27-0.64-0.68
IFI27-0.63-0.66
C1orf54-0.63-0.76
SRGN-0.62-0.68
MT-CO2-0.62-0.67
VAMP5-0.62-0.71
HIGD1B-0.62-0.69
Gene Ontology
Molecular functionGO termEvidenceNeuro keywordsPubMed ID
GO:0000166nucleotide bindingIEA-
GO:0003723RNA bindingTAS8855282 
GO:0005515protein bindingIPI16189514 |16713569 
Biological processGO termEvidenceNeuro keywordsPubMed ID
GO:0006396RNA processingTAS8855282 
 
Protein-protein InteractionsShown by network
InteractorsAliases BOfficial full name BExperimentalSourcePubMed ID
ARHGAP910C | FLJ16525 | MGC1295 | RGL1Rho GTPase activating protein 9Two-hybridBioGRID16189514 
C12orf12MGC26598chromosome 12 open reading frame 12Two-hybridBioGRID16189514 
C16orf48DAKV6410 | DKFZp434A1319chromosome 16 open reading frame 48Two-hybridBioGRID16189514 
C1orf94MGC15882chromosome 1 open reading frame 94Two-hybridBioGRID16189514 
C2orf51FLJ25369 | TSC21chromosome 2 open reading frame 51Two-hybridBioGRID16189514 
C9orf100FLJ14642 | MGC44886 | RP11-331F9.7chromosome 9 open reading frame 100Two-hybridBioGRID16189514 
C9orf86FLJ10101 | FLJ13045 | Parf | RBEL1 | bA216L13.9 | pp8875chromosome 9 open reading frame 86Two-hybridBioGRID16189514 
CCNKCPR4 | MGC9113cyclin KTwo-hybridBioGRID16189514 
CDC23APC8cell division cycle 23 homolog (S. cerevisiae)Two-hybridBioGRID16189514 
CDC42EP1BORG5 | CEP1 | MGC15316 | MSE55CDC42 effector protein (Rho GTPase binding) 1Two-hybridBioGRID16189514 
CNNM3ACDP3 | DKFZp434I1016 | FLJ20018cyclin M3Two-hybridBioGRID16189514 
DAZAP2KIAA0058 | MGC14319 | MGC766 | PRTBDAZ associated protein 2Two-hybridBioGRID16189514 
DTX2KIAA1528 | MGC71098 | RNF58deltex homolog 2 (Drosophila)Two-hybridBioGRID16189514 
DVL2-dishevelled, dsh homolog 2 (Drosophila)Two-hybridBioGRID16189514 
EWSR1EWSEwing sarcoma breakpoint region 1Two-hybridBioGRID16189514 
EYA2EAB1 | MGC10614eyes absent homolog 2 (Drosophila)Two-hybridBioGRID16189514 
FAM103A1C15orf18 | HsT19360 | MGC102778 | MGC2560family with sequence similarity 103, member A1Two-hybridBioGRID16189514 
FASTKFASTFas-activated serine/threonine kinaseTwo-hybridBioGRID16189514 
FOXS1FKHL18 | FREAC10 | MGC4544forkhead box S1Two-hybridBioGRID16189514 
FXR2FMR1L2fragile X mental retardation, autosomal homolog 2Two-hybridBioGRID16189514 
GRAP2GADS | GRAP-2 | GRB2L | GRBLG | GRID | GRPL | GrbX | Grf40 | Mona | P38GRB2-related adaptor protein 2Two-hybridBioGRID16189514 
HEYLHRT3 | MGC12623 | bHLHb33hairy/enhancer-of-split related with YRPW motif-likeTwo-hybridBioGRID16189514 
HOXA9ABD-B | HOX1 | HOX1.7 | HOX1G | MGC1934homeobox A9Two-hybridBioGRID16189514 
HOXB9HOX-2.5 | HOX2 | HOX2Ehomeobox B9Two-hybridBioGRID16189514 
KIAA0182GSE1KIAA0182Two-hybridBioGRID16189514 
LRRC41MGC126571 | MGC126573 | MUF1 | PP7759 | RP4-636H5.2leucine rich repeat containing 41Two-hybridBioGRID16189514 
LZTS2KIAA1813 | LAPSER1leucine zipper, putative tumor suppressor 2Two-hybridBioGRID16189514 
NEU4MGC102757 | MGC18222sialidase 4Two-hybridBioGRID16189514 
OTX1FLJ38361 | MGC15736orthodenticle homeobox 1Two-hybridBioGRID16189514 
PDLIM4RILPDZ and LIM domain 4Two-hybridBioGRID16189514 
PHF1MTF2L2 | PCL1 | PHF2PHD finger protein 1Two-hybridBioGRID16189514 
PIN1DOD | UBL5peptidylprolyl cis/trans isomerase, NIMA-interacting 1Two-hybridBioGRID16189514 
PITX1BFT | POTX | PTX1paired-like homeodomain 1Two-hybridBioGRID16189514 
POM121DKFZp586G1822 | DKFZp586P2220 | FLJ41820 | KIAA0618 | MGC3792 | POM121APOM121 membrane glycoprotein (rat)Two-hybridBioGRID16189514 
RBM9FOX2 | Fox-2 | HNRBP2 | HRNBP2 | RTA | dJ106I20.3 | fxhRNA binding motif protein 9Two-hybridBioGRID16189514 
RBPMSHERMESRNA binding protein with multiple splicingTwo-hybridBioGRID16189514 
RHOXF2PEPP-2 | PEPP2 | THG1Rhox homeobox family, member 2Two-hybridBioGRID16189514 
SERF24F5REL | FAM2C | FLJ20431 | FLJ37527 | FLJ38557 | H4F5rel | HsT17089 | MGC48826small EDRK-rich factor 2Two-hybridBioGRID16189514 
SF1D11S636 | ZFM1 | ZNF162splicing factor 1Two-hybridBioGRID16189514 
SMUG1FDG | HMUDG | MGC104370 | UNG3single-strand-selective monofunctional uracil-DNA glycosylase 1Affinity Capture-Western
Two-hybrid		BioGRID16189514 
STRBPDKFZp434N214 | FLJ11307 | FLJ14223 | FLJ14984 | ILF3L | MGC21529 | MGC3405 | SPNR | p74spermatid perinuclear RNA binding proteinTwo-hybridBioGRID16189514 
TOLLIPFLJ33531 | IL-1RAcPIPtoll interacting proteinTwo-hybridBioGRID16189514 
TRIP1316E1BPthyroid hormone receptor interactor 13Two-hybridBioGRID16189514 
ZC3H10FLJ14451 | ZC3HDC10zinc finger CCCH-type containing 10Two-hybridBioGRID16189514 
ZNF581FLJ22550 | HSPC189zinc finger protein 581Two-hybridBioGRID16189514 
 
Pathway annotation
Pathway namePathway size# SZGR genes in pathwayInfo
PICCALUGA_ANGIOIMMUNOBLASTIC_LYMPHOMA_UP 205140All SZGR genes in this pathway
LIU_PROSTATE_CANCER_DN 481290All SZGR genes in this pathway
TURASHVILI_BREAST_DUCTAL_CARCINOMA_VS_DUCTAL_NORMAL_DN 198110All SZGR genes in this pathway
HOOI_ST7_TARGETS_DN 12378All SZGR genes in this pathway
GAL_LEUKEMIC_STEM_CELL_UP 13378All SZGR genes in this pathway
BASAKI_YBX1_TARGETS_UP 290177All SZGR genes in this pathway
TAKEDA_TARGETS_OF_NUP98_HOXA9_FUSION_3D_UP 182110All SZGR genes in this pathway
TAKEDA_TARGETS_OF_NUP98_HOXA9_FUSION_8D_UP 15791All SZGR genes in this pathway
TAKEDA_TARGETS_OF_NUP98_HOXA9_FUSION_10D_UP 194122All SZGR genes in this pathway
MULLIGHAN_MLL_SIGNATURE_1_DN 242165All SZGR genes in this pathway
MULLIGHAN_MLL_SIGNATURE_2_DN 281186All SZGR genes in this pathway
TONKS_TARGETS_OF_RUNX1_RUNX1T1_FUSION_HSC_UP 185126All SZGR genes in this pathway
TONKS_TARGETS_OF_RUNX1_RUNX1T1_FUSION_ERYTHROCYTE_UP 157104All SZGR genes in this pathway
TONKS_TARGETS_OF_RUNX1_RUNX1T1_FUSION_SUSTAINDED_IN_ERYTHROCYTE_UP 4430All SZGR genes in this pathway
UDAYAKUMAR_MED1_TARGETS_DN 240171All SZGR genes in this pathway
SENESE_HDAC1_TARGETS_DN 260143All SZGR genes in this pathway
JAATINEN_HEMATOPOIETIC_STEM_CELL_UP 316190All SZGR genes in this pathway
GRAHAM_CML_QUIESCENT_VS_NORMAL_QUIESCENT_DN 4732All SZGR genes in this pathway
GRAHAM_CML_DIVIDING_VS_NORMAL_QUIESCENT_DN 9557All SZGR genes in this pathway
GRAHAM_NORMAL_QUIESCENT_VS_NORMAL_DIVIDING_UP 6647All SZGR genes in this pathway
RODRIGUES_THYROID_CARCINOMA_POORLY_DIFFERENTIATED_DN 805505All SZGR genes in this pathway
RODRIGUES_THYROID_CARCINOMA_ANAPLASTIC_DN 537339All SZGR genes in this pathway
GOZGIT_ESR1_TARGETS_DN 781465All SZGR genes in this pathway
CASTELLANO_HRAS_AND_NRAS_TARGETS_DN 86All SZGR genes in this pathway
CASTELLANO_NRAS_TARGETS_DN 1414All SZGR genes in this pathway
DACOSTA_UV_RESPONSE_VIA_ERCC3_TTD_DN 8463All SZGR genes in this pathway
SCHLOSSER_SERUM_RESPONSE_DN 712443All SZGR genes in this pathway
DACOSTA_ERCC3_ALLELE_XPCS_VS_TTD_DN 3627All SZGR genes in this pathway
DACOSTA_UV_RESPONSE_VIA_ERCC3_DN 855609All SZGR genes in this pathway
WOOD_EBV_EBNA1_TARGETS_UP 11071All SZGR genes in this pathway
SIMBULAN_UV_RESPONSE_NORMAL_DN 3327All SZGR genes in this pathway
TOMLINS_PROSTATE_CANCER_DN 4033All SZGR genes in this pathway
ROPERO_HDAC2_TARGETS 11471All SZGR genes in this pathway
WU_CELL_MIGRATION 184114All SZGR genes in this pathway
BENPORATH_NANOG_TARGETS 988594All SZGR genes in this pathway
BENPORATH_SOX2_TARGETS 734436All SZGR genes in this pathway
TARTE_PLASMA_CELL_VS_PLASMABLAST_UP 398262All SZGR genes in this pathway
UEDA_PERIFERAL_CLOCK 169111All SZGR genes in this pathway
BYSTRYKH_HEMATOPOIESIS_STEM_CELL_QTL_TRANS 882572All SZGR genes in this pathway
FLECHNER_BIOPSY_KIDNEY_TRANSPLANT_REJECTED_VS_OK_DN 546351All SZGR genes in this pathway
FLECHNER_BIOPSY_KIDNEY_TRANSPLANT_OK_VS_DONOR_UP 555346All SZGR genes in this pathway
HALMOS_CEBPA_TARGETS_DN 4626All SZGR genes in this pathway
PETROVA_ENDOTHELIUM_LYMPHATIC_VS_BLOOD_UP 13187All SZGR genes in this pathway
LI_WILMS_TUMOR_VS_FETAL_KIDNEY_1_UP 182119All SZGR genes in this pathway
VERHAAK_AML_WITH_NPM1_MUTATED_DN 246180All SZGR genes in this pathway
KUMAR_TARGETS_OF_MLL_AF9_FUSION 405264All SZGR genes in this pathway
BROWNE_HCMV_INFECTION_16HR_DN 8662All SZGR genes in this pathway
CUI_TCF21_TARGETS_2_DN 830547All SZGR genes in this pathway
BROWNE_HCMV_INFECTION_14HR_DN 298200All SZGR genes in this pathway
DELASERNA_MYOD_TARGETS_DN 5742All SZGR genes in this pathway
BAELDE_DIABETIC_NEPHROPATHY_UP 8648All SZGR genes in this pathway
KUNINGER_IGF1_VS_PDGFB_TARGETS_DN 4628All SZGR genes in this pathway
BLALOCK_ALZHEIMERS_DISEASE_UP 16911088All SZGR genes in this pathway
BROWNE_HCMV_INFECTION_48HR_DN 504323All SZGR genes in this pathway
BROWNE_HCMV_INFECTION_18HR_DN 178121All SZGR genes in this pathway
GEORGANTAS_HSC_MARKERS 7147All SZGR genes in this pathway
IVANOVA_HEMATOPOIESIS_STEM_CELL_AND_PROGENITOR 681420All SZGR genes in this pathway
XU_GH1_AUTOCRINE_TARGETS_DN 14294All SZGR genes in this pathway
BURTON_ADIPOGENESIS_6 189112All SZGR genes in this pathway
CREIGHTON_ENDOCRINE_THERAPY_RESISTANCE_1 528324All SZGR genes in this pathway
FOSTER_TOLERANT_MACROPHAGE_UP 15692All SZGR genes in this pathway
HUANG_FOXA2_TARGETS_UP 4528All SZGR genes in this pathway
ACEVEDO_LIVER_CANCER_WITH_H3K27ME3_UP 295149All SZGR genes in this pathway
WEST_ADRENOCORTICAL_TUMOR_DN 546362All SZGR genes in this pathway
MUELLER_PLURINET 299189All SZGR genes in this pathway
CHAUHAN_RESPONSE_TO_METHOXYESTRADIOL_UP 5132All SZGR genes in this pathway
AGUIRRE_PANCREATIC_CANCER_COPY_NUMBER_DN 238145All SZGR genes in this pathway
SHEDDEN_LUNG_CANCER_GOOD_SURVIVAL_A4 196124All SZGR genes in this pathway
HSIAO_HOUSEKEEPING_GENES 389245All SZGR genes in this pathway
MEISSNER_BRAIN_HCP_WITH_H3K4ME3_AND_H3K27ME3 1069729All SZGR genes in this pathway
VALK_AML_CLUSTER_10 3322All SZGR genes in this pathway
VALK_AML_WITH_EVI1 2515All SZGR genes in this pathway
YAGI_AML_WITH_INV_16_TRANSLOCATION 422277All SZGR genes in this pathway
YAGI_AML_WITH_11Q23_REARRANGED 351238All SZGR genes in this pathway
WONG_ADULT_TISSUE_STEM_MODULE 721492All SZGR genes in this pathway
NIELSEN_GIST_VS_SYNOVIAL_SARCOMA_DN 2017All SZGR genes in this pathway
NIELSEN_GIST 9866All SZGR genes in this pathway
CHYLA_CBFA2T3_TARGETS_UP 387225All SZGR genes in this pathway
LEE_BMP2_TARGETS_UP 745475All SZGR genes in this pathway
DELACROIX_RAR_BOUND_ES 462273All SZGR genes in this pathway
RAO_BOUND_BY_SALL4_ISOFORM_B 517302All SZGR genes in this pathway
GENTLES_LEUKEMIC_STEM_CELL_UP 2915All SZGR genes in this pathway
LIM_MAMMARY_STEM_CELL_UP 489314All SZGR genes in this pathway
DURAND_STROMA_NS_UP 162103All SZGR genes in this pathway
ZWANG_TRANSIENTLY_UP_BY_1ST_EGF_PULSE_ONLY 1839928All SZGR genes in this pathway
miRNA Targets ?
miRNA familyTarget positionmiRNA IDmiRNA seq
UTR startUTR endMatch method
miR-145303309m8hsa-miR-145GUCCAGUUUUCCCAGGAAUCCCUU
miR-329220226m8hsa-miR-329brainAACACACCUGGUUAACCUCUUU
miR-377222228m8hsa-miR-377AUCACACAAAGGCAACUUUUGU
miR-485-5p364370m8hsa-miR-485-5pAGAGGCUGGCCGUGAUGAAUUC
  • SZ: miRNAs which differentially expressed in brain cortex of schizophrenia patients comparing with control samples using microarray. Click here to see the list of SZ related miRNAs.
  • Brain: miRNAs which are expressed in brain based on miRNA microarray expression studies. Click here to see the list of brain related miRNAs.


Copyright © Bioinformatics and Systems Medicine Laboratory All Rights Reserved since 2009.