DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
CPH
CGC
Degron:
ALSST
Uniprot ID:
P13611
Source protein:
Versican core protein
Source gene:
VCAN
Class:
DEG_SPOP_SBC_1
Location:
1048:1052
E3 ligase:
SPOP
DEGRON score:
0.9809
ASA_SCORE:
76.54
COIL:
0.7266
CONS_SCORE:
0.3647
DSS_SCORE:
0.6137
HELIX:
0.0272
FCONS_SCORE:
0.9133
RIG_SCORE:
0.6996
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.S1050I
TCGA-17-Z045
LUAD
TCGA
ALSST
DEG_SPOP_SBC_1
0.7341
p.Q1040H
TCGA-AX-A2HC
UCEC
TCGA
ALSST
DEG_SPOP_SBC_1
0.1111
p.Q1040H
DO41572
UCEC
ICGC
ALSST
DEG_SPOP_SBC_1
0.1111
p.K1057N
TCGA-AX-A2HC
UCEC
TCGA
ALSST
DEG_SPOP_SBC_1
0.3056
p.K1057N
DO41572
UCEC
ICGC
ALSST
DEG_SPOP_SBC_1
0.3056
p.E1058K
TCGA-QB-A6FS
SKCM
TCGA
ALSST
DEG_SPOP_SBC_1
0.1667
p.E1058K
DO48654
SKCM
ICGC
ALSST
DEG_SPOP_SBC_1
0.1667
p.S1050G
DO233760
GACA
ICGC
ALSST
DEG_SPOP_SBC_1
0.6993
p.A1053S
DO233951
GACA
ICGC
ALSST
DEG_SPOP_SBC_1
0.3056
p.E1043D
SIDM01611
Endometrial Carcinoma
GDSC
ALSST
DEG_SPOP_SBC_1
0.1944
p.E1043D
ACH-000996
Endometrial/Uterine Cancer
CCLE
ALSST
DEG_SPOP_SBC_1
0.1944
p.R1038M
LoVo
large_intestine
COSMIC
ALSST
DEG_SPOP_SBC_1
0.1667
p.G1048D
KM12
large_intestine
COSMIC
ALSST
DEG_SPOP_SBC_1
0.7198
p.K1045T
NK-92MI
haematopoietic_and_lymphoid_tissue
COSMIC
ALSST
DEG_SPOP_SBC_1
0.25
Drug responses associated with VCAN mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of ALSST
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
P13611
Versican core protein
DEG_SPOP_SBC_1
1048:1052
ALSST
SPOP
0.9809
More...
Q96GC6
Neurotrophin receptor-interacting factor homolog
DEG_SPOP_SBC_1
362:366
ALSST
SPOP
0.8364
More...
Q96T23
Remodeling and spacing factor 1
DEG_SPOP_SBC_1
555:559
ALSST
SPOP
0.6085
More...
Q9UBF2
Coatomer subunit gamma-2
DEG_SPOP_SBC_1
787:791
ALSST
SPOP
0.7115
More...
Q9Y5Y4
Prostaglandin D2 receptor 2
DEG_SPOP_SBC_1
389:393
ALSST
SPOP
0.9088
More...
Q7L1V2
Vacuolar fusion protein MON1 homolog B
DEG_SPOP_SBC_1
68:72
ALSST
SPOP
0.6448
More...
Q92576
PHD finger protein 3
DEG_SPOP_SBC_1
1158:1162
ALSST
SPOP
0.997
More...