DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
CPH
CGC
Degron:
ALSST
Uniprot ID:
Q96T23
Source protein:
Remodeling and spacing factor 1
Source gene:
RSF1
Class:
DEG_SPOP_SBC_1
Location:
555:559
E3 ligase:
SPOP
DEGRON score:
0.6085
ASA_SCORE:
84.36
COIL:
0.7648
CONS_SCORE:
0.3691
DSS_SCORE:
0.5943
HELIX:
0.1724
FCONS_SCORE:
0.8902
RIG_SCORE:
0.6269
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.K565I
TCGA-33-AASI
LUSC
TCGA
ALSST
DEG_SPOP_SBC_1
0.2778
p.D549Y
TCGA-BH-A0DG
BRCA
TCGA
ALSST
DEG_SPOP_SBC_1
0.1667
p.D549Y
TCGA-BS-A0UV
UCEC
TCGA
ALSST
DEG_SPOP_SBC_1
0.1667
p.L550I
TCGA-F5-6814
READ
TCGA
ALSST
DEG_SPOP_SBC_1
0.1944
p.T559A
TCGA-OR-A5L5
ACC
TCGA
ALSST
DEG_SPOP_SBC_1
0.7139
p.E556D
DO8184
COAD
ICGC
ALSST
DEG_SPOP_SBC_1
0.6758
p.G549R
DO220851
MELA
ICGC
ALSST
DEG_SPOP_SBC_1
0.1667
p.E552K
DO47807
STAD
ICGC
ALSST
DEG_SPOP_SBC_1
0.25
p.A561S
DO41572
UCEC
ICGC
ALSST
DEG_SPOP_SBC_1
0.7222
p.K548E
SIDM00600
Thyroid Gland Carcinoma
GDSC
ALSST
DEG_SPOP_SBC_1
0.25
p.K548E
ACH-001528
Thyroid Cancer
CCLE
ALSST
DEG_SPOP_SBC_1
0.25
p.K548E
IHH-4
thyroid
COSMIC
ALSST
DEG_SPOP_SBC_1
0.25
p.S558F
SIDM00518
Mesothelioma
GDSC
ALSST
DEG_SPOP_SBC_1
0.7982
p.S558F
ACH-002136
Lung Cancer
CCLE
ALSST
DEG_SPOP_SBC_1
0.7982
p.S558F
H290
pleura
COSMIC
ALSST
DEG_SPOP_SBC_1
0.7982
p.K569Q
ACH-001460
Colon/Colorectal Cancer
CCLE
ALSST
DEG_SPOP_SBC_1
0.1667
p.A561P
KP-4
pancreas
COSMIC
ALSST
DEG_SPOP_SBC_1
0.7222
Drug responses associated with RSF1 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of ALSST
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
P13611
Versican core protein
DEG_SPOP_SBC_1
1048:1052
ALSST
SPOP
0.9809
More...
Q96GC6
Neurotrophin receptor-interacting factor homolog
DEG_SPOP_SBC_1
362:366
ALSST
SPOP
0.8364
More...
Q96T23
Remodeling and spacing factor 1
DEG_SPOP_SBC_1
555:559
ALSST
SPOP
0.6085
More...
Q9UBF2
Coatomer subunit gamma-2
DEG_SPOP_SBC_1
787:791
ALSST
SPOP
0.7115
More...
Q9Y5Y4
Prostaglandin D2 receptor 2
DEG_SPOP_SBC_1
389:393
ALSST
SPOP
0.9088
More...
Q7L1V2
Vacuolar fusion protein MON1 homolog B
DEG_SPOP_SBC_1
68:72
ALSST
SPOP
0.6448
More...
Q92576
PHD finger protein 3
DEG_SPOP_SBC_1
1158:1162
ALSST
SPOP
0.997
More...