DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
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Degron:
SLR
Uniprot ID:
Q6P996
Source protein:
Pyridoxal-dependent decarboxylase domain-containing protein 1
Source gene:
PDXDC1
Class:
DEG_APCC_TPR_1
Location:
786:788
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.9326
ASA_SCORE:
106.2333
COIL:
0.63
CONS_SCORE:
0.2671
DSS_SCORE:
0.9939
HELIX:
0.3453
FCONS_SCORE:
1.0541
RIG_SCORE:
0.6571
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.R788S
TCGA-B5-A3FA
UCEC
TCGA
SLR
DEG_APCC_TPR_1
0.7427
p.P784L
SIDM01409
Bladder Carcinoma
GDSC
SLR
DEG_APCC_TPR_1
0.2778
p.E793D
VCaP
prostate
COSMIC
SLR
DEG_APCC_TPR_1
0.1944
p.D780N
IGR-1
skin
COSMIC
SLR
DEG_APCC_TPR_1
0.1667
p.Q781R
NCI-H660
prostate
COSMIC
SLR
DEG_APCC_TPR_1
0.1944
p.P776R
LS-123
large_intestine
COSMIC
SLR
DEG_APCC_TPR_1
0.0556
Drug responses associated with PDXDC1 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of SLR
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
A0JLT2
Mediator of RNA polymerase II transcription subunit 19
DEG_APCC_TPR_1
242:244
SLR
APC,CDC20,FZR1
0.9687
More...
P33076
MHC class II transactivator
DEG_APCC_TPR_1
1128:1130
SLR
APC,CDC20,FZR1
0.5639
More...
Q5TB30
DEP domain-containing protein 1A
DEG_APCC_TPR_1
809:811
SLR
APC,CDC20,FZR1
0.9983
More...
Q9UPV9
Trafficking kinesin-binding protein 1
DEG_APCC_TPR_1
951:953
SLR
APC,CDC20,FZR1
0.6844
More...
Q6P996
Pyridoxal-dependent decarboxylase domain-containing protein 1
DEG_APCC_TPR_1
786:788
SLR
APC,CDC20,FZR1
0.9326
More...
Q9BXG8
Spermatogenic leucine zipper protein 1
DEG_APCC_TPR_1
428:430
SLR
APC,CDC20,FZR1
0.9713
More...
Q9ULS6
Potassium voltage-gated channel subfamily S member 2
DEG_APCC_TPR_1
475:477
SLR
APC,CDC20,FZR1
0.8591
More...