DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
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Degron:
SLR
Uniprot ID:
Q9ULS6
Source protein:
Potassium voltage-gated channel subfamily S member 2
Source gene:
KCNS2
Class:
DEG_APCC_TPR_1
Location:
475:477
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.8591
ASA_SCORE:
131.0333
COIL:
0.925
CONS_SCORE:
0.5722
DSS_SCORE:
0.881
HELIX:
0.0807
FCONS_SCORE:
0.9699
RIG_SCORE:
0.6965
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.R477P
TCGA-3N-A9WC
SKCM
TCGA
SLR
DEG_APCC_TPR_1
0.7512
p.R477P
DO51234
SKCM
ICGC
SLR
DEG_APCC_TPR_1
0.7512
p.R477C
TCGA-58-A46L
LUSC
TCGA
SLR
DEG_APCC_TPR_1
0.8301
p.R477C
DO45434
LUSC
ICGC
SLR
DEG_APCC_TPR_1
0.8301
p.S468C
DO233260
GACA
ICGC
SLR
DEG_APCC_TPR_1
0.1389
p.E469K
SIDM00140
Melanoma
GDSC
SLR
DEG_APCC_TPR_1
0.1667
p.E469K
ACH-000968
Skin Cancer
CCLE
SLR
DEG_APCC_TPR_1
0.1667
p.E469K
COLO-792
skin
COSMIC
SLR
DEG_APCC_TPR_1
0.1667
Drug responses associated with KCNS2 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of SLR
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
A0JLT2
Mediator of RNA polymerase II transcription subunit 19
DEG_APCC_TPR_1
242:244
SLR
APC,CDC20,FZR1
0.9687
More...
P33076
MHC class II transactivator
DEG_APCC_TPR_1
1128:1130
SLR
APC,CDC20,FZR1
0.5639
More...
Q5TB30
DEP domain-containing protein 1A
DEG_APCC_TPR_1
809:811
SLR
APC,CDC20,FZR1
0.9983
More...
Q9UPV9
Trafficking kinesin-binding protein 1
DEG_APCC_TPR_1
951:953
SLR
APC,CDC20,FZR1
0.6844
More...
Q6P996
Pyridoxal-dependent decarboxylase domain-containing protein 1
DEG_APCC_TPR_1
786:788
SLR
APC,CDC20,FZR1
0.9326
More...
Q9BXG8
Spermatogenic leucine zipper protein 1
DEG_APCC_TPR_1
428:430
SLR
APC,CDC20,FZR1
0.9713
More...
Q9ULS6
Potassium voltage-gated channel subfamily S member 2
DEG_APCC_TPR_1
475:477
SLR
APC,CDC20,FZR1
0.8591
More...