DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
VETSS
Uniprot ID:
P35658
Source protein:
Nuclear pore complex protein Nup214
Source gene:
NUP214
Class:
DEG_SPOP_SBC_1
Location:
1609:1613
E3 ligase:
SPOP
DEGRON score:
0.9382
ASA_SCORE:
92.52
COIL:
0.9134
CONS_SCORE:
0.2707
DSS_SCORE:
0.4084
HELIX:
0.0238
FCONS_SCORE:
0.9186
RIG_SCORE:
0.7304
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.S1622P
TCGA-CG-5721
STAD
TCGA
VETSS
DEG_SPOP_SBC_1
0.0833
p.E1610K
DO229036
LICA
ICGC
VETSS
DEG_SPOP_SBC_1
0.591
p.S1612P
DO38192
STAD
ICGC
VETSS
DEG_SPOP_SBC_1
0.6752
p.A1622T
DO42881
UCEC
ICGC
VETSS
DEG_SPOP_SBC_1
0.0833
p.T1614A
SIDM01116
Non-Small Cell Lung Carcinoma
GDSC
VETSS
DEG_SPOP_SBC_1
0.3056
p.V1609I
SIDM00875
Breast Carcinoma
GDSC
VETSS
DEG_SPOP_SBC_1
0.7076
p.V1609I
ACH-000624
Breast Cancer
CCLE
VETSS
DEG_SPOP_SBC_1
0.7076
p.V1609I
HCC1806
breast
COSMIC
VETSS
DEG_SPOP_SBC_1
0.7076
p.P1606S
SIDM00126
Melanoma
GDSC
VETSS
DEG_SPOP_SBC_1
0.25
p.P1606S
ACH-002147
Skin Cancer
CCLE
VETSS
DEG_SPOP_SBC_1
0.25
p.P1606S
K2
skin
COSMIC
VETSS
DEG_SPOP_SBC_1
0.25
p.G1605C
SIDM00839
Colorectal Carcinoma
GDSC
VETSS
DEG_SPOP_SBC_1
0.2222
p.G1605C
ACH-000950
Colon/Colorectal Cancer
CCLE
VETSS
DEG_SPOP_SBC_1
0.2222
p.G1605C
LoVo
large_intestine
COSMIC
VETSS
DEG_SPOP_SBC_1
0.2222
p.T1611M
SNU-1040
large_intestine
COSMIC
VETSS
DEG_SPOP_SBC_1
0.7423
p.V1599I
HCC1806
breast
COSMIC
VETSS
DEG_SPOP_SBC_1
0.0556
Drug responses associated with NUP214 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of VETSS
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
P35658
Nuclear pore complex protein Nup214
DEG_SPOP_SBC_1
1609:1613
VETSS
SPOP
0.9382
More...
Q2M3C7
A-kinase anchor protein SPHKAP
DEG_SPOP_SBC_1
477:481
VETSS
SPOP
0.9644
More...
Q86UP2
Kinectin
DEG_SPOP_SBC_1
105:109
VETSS
SPOP
0.9538
More...
Q8WXI7
Mucin-16
DEG_SPOP_SBC_1
2459:2463
VETSS
SPOP
0.921
More...
Q7Z3V4
Ubiquitin-protein ligase E3B
DEG_SPOP_SBC_1
671:675
VETSS
SPOP
0.902
More...
Q5VYV7
Protein SLX4IP
DEG_SPOP_SBC_1
190:194
VETSS
SPOP
0.9987
More...
A8MU93
Uncharacterized protein C17orf100
DEG_SPOP_SBC_1
27:31
VETSS
SPOP
0.9983
More...
A8MU93
Uncharacterized protein C17orf100
DEG_SPOP_SBC_1
34:38
VETSS
SPOP
0.9254
More...