DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
VETSS
Uniprot ID:
Q5VYV7
Source protein:
Protein SLX4IP
Source gene:
SLX4IP
Class:
DEG_SPOP_SBC_1
Location:
190:194
E3 ligase:
SPOP
DEGRON score:
0.9987
ASA_SCORE:
77.86
COIL:
0.7878
CONS_SCORE:
0.3969
DSS_SCORE:
0.5877
HELIX:
0.1168
FCONS_SCORE:
1.141
RIG_SCORE:
0.6977
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.T180R
TCGA-60-2721
LUSC
TCGA
VETSS
DEG_SPOP_SBC_1
0.0556
p.T180R
TCGA-90-A4EE
LUSC
TCGA
VETSS
DEG_SPOP_SBC_1
0.0556
p.T180R
DO26447
LUSC
ICGC
VETSS
DEG_SPOP_SBC_1
0.0556
p.T180R
DO45513
LUSC
ICGC
VETSS
DEG_SPOP_SBC_1
0.0556
p.T180R
SIDM01039
Other Solid Cancers
GDSC
VETSS
DEG_SPOP_SBC_1
0.0556
p.T180R
ACH-001529
Endometrial/Uterine Cancer
CCLE
VETSS
DEG_SPOP_SBC_1
0.0556
p.T180R
JAR
placenta
COSMIC
VETSS
DEG_SPOP_SBC_1
0.0556
p.S183L
TCGA-A5-A0G2
UCEC
TCGA
VETSS
DEG_SPOP_SBC_1
0.5833
p.S183L
DO41235
UCEC
ICGC
VETSS
DEG_SPOP_SBC_1
0.5833
p.A199V
TCGA-GF-A6C9
SKCM
TCGA
VETSS
DEG_SPOP_SBC_1
0.1944
p.A199V
DO51254
SKCM
ICGC
VETSS
DEG_SPOP_SBC_1
0.1944
Drug responses associated with SLX4IP mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of VETSS
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
P35658
Nuclear pore complex protein Nup214
DEG_SPOP_SBC_1
1609:1613
VETSS
SPOP
0.9382
More...
Q2M3C7
A-kinase anchor protein SPHKAP
DEG_SPOP_SBC_1
477:481
VETSS
SPOP
0.9644
More...
Q86UP2
Kinectin
DEG_SPOP_SBC_1
105:109
VETSS
SPOP
0.9538
More...
Q8WXI7
Mucin-16
DEG_SPOP_SBC_1
2459:2463
VETSS
SPOP
0.921
More...
Q7Z3V4
Ubiquitin-protein ligase E3B
DEG_SPOP_SBC_1
671:675
VETSS
SPOP
0.902
More...
Q5VYV7
Protein SLX4IP
DEG_SPOP_SBC_1
190:194
VETSS
SPOP
0.9987
More...
A8MU93
Uncharacterized protein C17orf100
DEG_SPOP_SBC_1
27:31
VETSS
SPOP
0.9983
More...
A8MU93
Uncharacterized protein C17orf100
DEG_SPOP_SBC_1
34:38
VETSS
SPOP
0.9254
More...