DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
CPH
CGC
Degron:
VHSSS
Uniprot ID:
Q9UPV0
Source protein:
Centrosomal protein of 164 kDa
Source gene:
CEP164
Class:
DEG_SPOP_SBC_1
Location:
231:235
E3 ligase:
SPOP
DEGRON score:
0.7399
ASA_SCORE:
81.2
COIL:
0.7556
CONS_SCORE:
0.738
DSS_SCORE:
0.7006
HELIX:
0.2072
FCONS_SCORE:
1.0208
RIG_SCORE:
0.6251
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.D244Y
TCGA-VQ-A8P2
STAD
TCGA
VHSSS
DEG_SPOP_SBC_1
0.0833
p.D244Y
DO51761
STAD
ICGC
VHSSS
DEG_SPOP_SBC_1
0.0833
p.S226R
DO222762
COCA
ICGC
VHSSS
DEG_SPOP_SBC_1
0.1944
p.H232R
DO48225
ESCA
ICGC
VHSSS
DEG_SPOP_SBC_1
0.7133
p.H232R
SIDM01090
Colorectal Carcinoma
GDSC
VHSSS
DEG_SPOP_SBC_1
0.7133
p.H232R
ACH-000943
Colon/Colorectal Cancer
CCLE
VHSSS
DEG_SPOP_SBC_1
0.7133
p.H232R
RKO
large_intestine
COSMIC
VHSSS
DEG_SPOP_SBC_1
0.7133
p.H232Q
SIDM00789
Colorectal Carcinoma
GDSC
VHSSS
DEG_SPOP_SBC_1
0.647
p.H232Q
ACH-000997
Colon/Colorectal Cancer
CCLE
VHSSS
DEG_SPOP_SBC_1
0.647
p.H232Q
HCT-15
large_intestine
COSMIC
VHSSS
DEG_SPOP_SBC_1
0.647
p.Q229R
SIDM01146
Gastric Carcinoma
GDSC
VHSSS
DEG_SPOP_SBC_1
0.2778
p.Q229R
NCI-SNU-1
stomach
COSMIC
VHSSS
DEG_SPOP_SBC_1
0.2778
p.I245M
SIDM00273
Glioblastoma
GDSC
VHSSS
DEG_SPOP_SBC_1
0.0556
p.I245M
ACH-000756
Brain Cancer
CCLE
VHSSS
DEG_SPOP_SBC_1
0.0556
p.I245M
GI-1
central_nervous_system
COSMIC
VHSSS
DEG_SPOP_SBC_1
0.0556
Drug responses associated with CEP164 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of VHSSS
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O14544
Suppressor of cytokine signaling 6
DEG_SPOP_SBC_1
159:163
VHSSS
SPOP
0.9987
More...
O15265
Ataxin-7
DEG_SPOP_SBC_1
715:719
VHSSS
SPOP
0.9841
More...
Q7Z4V0
Zinc finger protein 438
DEG_SPOP_SBC_1
713:717
VHSSS
SPOP
0.5994
More...
Q8N5C8
TGF-beta-activated kinase 1 and MAP3K7-binding protein 3
DEG_SPOP_SBC_1
99:103
VHSSS
SPOP
0.9941
More...
Q9UPV0
Centrosomal protein of 164 kDa
DEG_SPOP_SBC_1
231:235
VHSSS
SPOP
0.7399
More...
Q9C0I3
Serine-rich coiled-coil domain-containing protein 1
DEG_SPOP_SBC_1
41:45
VHSSS
SPOP
0.9419
More...
Q9ULL0
Acrosomal protein KIAA1210
DEG_SPOP_SBC_1
1375:1379
VHSSS
SPOP
0.7433
More...