DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
CPH
CGC
Degron:
VKTSS
Uniprot ID:
Q5SW79
Source protein:
Centrosomal protein of 170 kDa
Source gene:
CEP170
Class:
DEG_SPOP_SBC_1
Location:
1466:1470
E3 ligase:
SPOP
DEGRON score:
0.6301
ASA_SCORE:
63.62
COIL:
0.8352
CONS_SCORE:
0.6441
DSS_SCORE:
0.2687
HELIX:
0.0864
FCONS_SCORE:
0.9518
RIG_SCORE:
0.7684
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.Q1478H
TCGA-63-A5MT
LUSC
TCGA
VKTSS
DEG_SPOP_SBC_1
0.1111
p.I1473M
TCGA-AJ-A3EL
UCEC
TCGA
VKTSS
DEG_SPOP_SBC_1
0.25
p.S1474Y
TCGA-F5-6814
READ
TCGA
VKTSS
DEG_SPOP_SBC_1
0.2222
p.S1474Y
SIDM00193
Colorectal Carcinoma
GDSC
VKTSS
DEG_SPOP_SBC_1
0.2222
p.S1474Y
ACH-000991
Colon/Colorectal Cancer
CCLE
VKTSS
DEG_SPOP_SBC_1
0.2222
p.S1474Y
SNU-81
large_intestine
COSMIC
VKTSS
DEG_SPOP_SBC_1
0.2222
p.E1460Q
TCGA-YC-A89H
BLCA
TCGA
VKTSS
DEG_SPOP_SBC_1
0.1667
p.L1480M
SIDM01218
Other Solid Cancers
GDSC
VKTSS
DEG_SPOP_SBC_1
0.0556
p.S1475F
SIDM01027
Esophageal Squamous Cell Carcinoma
GDSC
VKTSS
DEG_SPOP_SBC_1
0.1944
p.S1475F
ACH-000865
Esophageal Cancer
CCLE
VKTSS
DEG_SPOP_SBC_1
0.1944
p.S1475F
KYSE-450
oesophagus
COSMIC
VKTSS
DEG_SPOP_SBC_1
0.1944
p.E1472Q
SIDM00554
Ovarian Carcinoma
GDSC
VKTSS
DEG_SPOP_SBC_1
0.2778
p.E1472Q
KURAMOCHI
ovary
COSMIC
VKTSS
DEG_SPOP_SBC_1
0.2778
p.I1468T
JHH-4
liver
COSMIC
VKTSS
DEG_SPOP_SBC_1
0.7078
Drug responses associated with CEP170 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of VKTSS
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O60281
Zinc finger protein 292
DEG_SPOP_SBC_1
1054:1058
VKTSS
SPOP
0.9214
More...
Q5SW79
Centrosomal protein of 170 kDa
DEG_SPOP_SBC_1
1466:1470
VKTSS
SPOP
0.6301
More...
Q5XKE5
Keratin, type II cytoskeletal 79
DEG_SPOP_SBC_1
528:532
VKTSS
SPOP
0.6487
More...
Q8WUA4
General transcription factor 3C polypeptide 2
DEG_SPOP_SBC_1
36:40
VKTSS
SPOP
0.7835
More...
Q8WWK9
Cytoskeleton-associated protein 2
DEG_SPOP_SBC_1
300:304
VKTSS
SPOP
0.9861
More...
Q96L14
Cep170-like protein
DEG_SPOP_SBC_1
175:179
VKTSS
SPOP
0.8196
More...
Q9UK28
Transmembrane protein 59-like
DEG_SPOP_SBC_1
237:241
VKTSS
SPOP
0.8378
More...