DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
VKTSS
Uniprot ID:
Q8WWK9
Source protein:
Cytoskeleton-associated protein 2
Source gene:
CKAP2
Class:
DEG_SPOP_SBC_1
Location:
300:304
E3 ligase:
SPOP
DEGRON score:
0.9861
ASA_SCORE:
92.12
COIL:
0.8802
CONS_SCORE:
0.3266
DSS_SCORE:
0.4374
HELIX:
0.0738
FCONS_SCORE:
1.1331
RIG_SCORE:
0.7001
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.K294Q
TCGA-06-5416
GBM
TCGA
VKTSS
DEG_SPOP_SBC_1
0.6111
p.K312N
TCGA-19-5956
GBM
TCGA
VKTSS
DEG_SPOP_SBC_1
0.2222
p.K312N
TCGA-Q1-A73O
CESC
TCGA
VKTSS
DEG_SPOP_SBC_1
0.2222
p.K301N
TCGA-BR-8680
STAD
TCGA
VKTSS
DEG_SPOP_SBC_1
0.5806
p.I309M
TCGA-BS-A0UV
UCEC
TCGA
VKTSS
DEG_SPOP_SBC_1
0.1944
p.S304Y
TCGA-CA-6718
COAD
TCGA
VKTSS
DEG_SPOP_SBC_1
0.8231
p.K301R
TCGA-S3-AA11
BRCA
TCGA
VKTSS
DEG_SPOP_SBC_1
0.6126
p.A309P
DO43795
UCEC
ICGC
VKTSS
DEG_SPOP_SBC_1
0.1944
p.R310T
SIDM00313
Hodgkin's Lymphoma
GDSC
VKTSS
DEG_SPOP_SBC_1
0.1667
p.R310T
ACH-000702
Lymphoma
CCLE
VKTSS
DEG_SPOP_SBC_1
0.1667
p.R310T
L-1236
haematopoietic_and_lymphoid_tissue
COSMIC
VKTSS
DEG_SPOP_SBC_1
0.1667
p.V304A
EN
endometrium
COSMIC
VKTSS
DEG_SPOP_SBC_1
0.6936
p.R309T
L-1236
haematopoietic_and_lymphoid_tissue
COSMIC
VKTSS
DEG_SPOP_SBC_1
0.1944
Drug responses associated with CKAP2 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of VKTSS
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O60281
Zinc finger protein 292
DEG_SPOP_SBC_1
1054:1058
VKTSS
SPOP
0.9214
More...
Q5SW79
Centrosomal protein of 170 kDa
DEG_SPOP_SBC_1
1466:1470
VKTSS
SPOP
0.6301
More...
Q5XKE5
Keratin, type II cytoskeletal 79
DEG_SPOP_SBC_1
528:532
VKTSS
SPOP
0.6487
More...
Q8WUA4
General transcription factor 3C polypeptide 2
DEG_SPOP_SBC_1
36:40
VKTSS
SPOP
0.7835
More...
Q8WWK9
Cytoskeleton-associated protein 2
DEG_SPOP_SBC_1
300:304
VKTSS
SPOP
0.9861
More...
Q96L14
Cep170-like protein
DEG_SPOP_SBC_1
175:179
VKTSS
SPOP
0.8196
More...
Q9UK28
Transmembrane protein 59-like
DEG_SPOP_SBC_1
237:241
VKTSS
SPOP
0.8378
More...