DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
VKTSS
Uniprot ID:
Q9UK28
Source protein:
Transmembrane protein 59-like
Source gene:
TMEM59L
Class:
DEG_SPOP_SBC_1
Location:
237:241
E3 ligase:
SPOP
DEGRON score:
0.8378
ASA_SCORE:
97.28
COIL:
0.8306
CONS_SCORE:
0.4463
DSS_SCORE:
0.4647
HELIX:
0.1076
FCONS_SCORE:
1.2976
RIG_SCORE:
0.7222
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.S241N
TCGA-06-5416
GBM
TCGA
VKTSS
DEG_SPOP_SBC_1
0.7069
p.S241N
DO10880
GBM
ICGC
VKTSS
DEG_SPOP_SBC_1
0.7069
p.V230A
TCGA-AP-A054
UCEC
TCGA
VKTSS
DEG_SPOP_SBC_1
0.1389
p.V230A
DO42256
UCEC
ICGC
VKTSS
DEG_SPOP_SBC_1
0.1389
p.S247F
TCGA-C8-A1HM
BRCA
TCGA
VKTSS
DEG_SPOP_SBC_1
0.1667
p.S247F
DO3904
BRCA
ICGC
VKTSS
DEG_SPOP_SBC_1
0.1667
p.V245A
TCGA-EY-A1GD
UCEC
TCGA
VKTSS
DEG_SPOP_SBC_1
0.2222
p.V245A
DO42129
UCEC
ICGC
VKTSS
DEG_SPOP_SBC_1
0.2222
p.S240N
TCGA-EY-A1GK
UCEC
TCGA
VKTSS
DEG_SPOP_SBC_1
0.7069
p.S240N
TCGA-G4-6320
COAD
TCGA
VKTSS
DEG_SPOP_SBC_1
0.7069
p.S240N
DO8159
COAD
ICGC
VKTSS
DEG_SPOP_SBC_1
0.7069
p.S240N
DO42985
UCEC
ICGC
VKTSS
DEG_SPOP_SBC_1
0.7069
p.E248Q
DO48429
BLCA
ICGC
VKTSS
DEG_SPOP_SBC_1
0.1389
p.A243V
DO229010
COCA
ICGC
VKTSS
DEG_SPOP_SBC_1
0.2778
p.A243V
SIDM00544
Neuroblastoma
GDSC
VKTSS
DEG_SPOP_SBC_1
0.2778
p.A243V
SIDM00054
Pancreatic Carcinoma
GDSC
VKTSS
DEG_SPOP_SBC_1
0.2778
p.A243V
SIDM01335
Kidney Carcinoma
GDSC
VKTSS
DEG_SPOP_SBC_1
0.2778
p.A243V
SIDM01729
Endometrial Carcinoma
GDSC
VKTSS
DEG_SPOP_SBC_1
0.2778
p.E249K
ACH-000194
Non-Cancerous
CCLE
VKTSS
DEG_SPOP_SBC_1
0.1111
Drug responses associated with TMEM59L mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of VKTSS
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O60281
Zinc finger protein 292
DEG_SPOP_SBC_1
1054:1058
VKTSS
SPOP
0.9214
More...
Q5SW79
Centrosomal protein of 170 kDa
DEG_SPOP_SBC_1
1466:1470
VKTSS
SPOP
0.6301
More...
Q5XKE5
Keratin, type II cytoskeletal 79
DEG_SPOP_SBC_1
528:532
VKTSS
SPOP
0.6487
More...
Q8WUA4
General transcription factor 3C polypeptide 2
DEG_SPOP_SBC_1
36:40
VKTSS
SPOP
0.7835
More...
Q8WWK9
Cytoskeleton-associated protein 2
DEG_SPOP_SBC_1
300:304
VKTSS
SPOP
0.9861
More...
Q96L14
Cep170-like protein
DEG_SPOP_SBC_1
175:179
VKTSS
SPOP
0.8196
More...
Q9UK28
Transmembrane protein 59-like
DEG_SPOP_SBC_1
237:241
VKTSS
SPOP
0.8378
More...