DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
VKTSS
Uniprot ID:
Q5XKE5
Source protein:
Keratin, type II cytoskeletal 79
Source gene:
KRT79
Class:
DEG_SPOP_SBC_1
Location:
528:532
E3 ligase:
SPOP
DEGRON score:
0.6487
ASA_SCORE:
94
COIL:
0.8858
CONS_SCORE:
0.7728
DSS_SCORE:
0.7085
HELIX:
0.0686
FCONS_SCORE:
0.9929
RIG_SCORE:
0.7762
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.T530M
TCGA-78-8660
LUAD
TCGA
VKTSS
DEG_SPOP_SBC_1
0.7423
p.T530M
DO222389
BTCA
ICGC
VKTSS
DEG_SPOP_SBC_1
0.7423
p.T530M
DO45321
LUAD
ICGC
VKTSS
DEG_SPOP_SBC_1
0.7423
p.L522M
TCGA-A4-7583
KIRP
TCGA
VKTSS
DEG_SPOP_SBC_1
0.1667
p.L522M
DO20870
KIRP
ICGC
VKTSS
DEG_SPOP_SBC_1
0.1667
p.K524N
DO42673
UCEC
ICGC
VKTSS
DEG_SPOP_SBC_1
0.3333
p.T527M
SIDM00633
Breast Carcinoma
GDSC
VKTSS
DEG_SPOP_SBC_1
0.75
p.T527M
SIDM00483
Esophageal Carcinoma
GDSC
VKTSS
DEG_SPOP_SBC_1
0.75
p.T527M
SIDM01133
Other Solid Cancers
GDSC
VKTSS
DEG_SPOP_SBC_1
0.75
p.T527M
SIDM00785
Acute Myeloid Leukemia
GDSC
VKTSS
DEG_SPOP_SBC_1
0.75
Drug responses associated with KRT79 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of VKTSS
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O60281
Zinc finger protein 292
DEG_SPOP_SBC_1
1054:1058
VKTSS
SPOP
0.9214
More...
Q5SW79
Centrosomal protein of 170 kDa
DEG_SPOP_SBC_1
1466:1470
VKTSS
SPOP
0.6301
More...
Q5XKE5
Keratin, type II cytoskeletal 79
DEG_SPOP_SBC_1
528:532
VKTSS
SPOP
0.6487
More...
Q8WUA4
General transcription factor 3C polypeptide 2
DEG_SPOP_SBC_1
36:40
VKTSS
SPOP
0.7835
More...
Q8WWK9
Cytoskeleton-associated protein 2
DEG_SPOP_SBC_1
300:304
VKTSS
SPOP
0.9861
More...
Q96L14
Cep170-like protein
DEG_SPOP_SBC_1
175:179
VKTSS
SPOP
0.8196
More...
Q9UK28
Transmembrane protein 59-like
DEG_SPOP_SBC_1
237:241
VKTSS
SPOP
0.8378
More...