DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
VKTSS
Uniprot ID:
Q8WUA4
Source protein:
General transcription factor 3C polypeptide 2
Source gene:
GTF3C2
Class:
DEG_SPOP_SBC_1
Location:
36:40
E3 ligase:
SPOP
DEGRON score:
0.7835
ASA_SCORE:
92.96
COIL:
0.8786
CONS_SCORE:
0.3578
DSS_SCORE:
0.5424
HELIX:
0.0968
FCONS_SCORE:
0.9472
RIG_SCORE:
0.7279
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.N32D
TCGA-37-A5EN
LUSC
TCGA
VKTSS
DEG_SPOP_SBC_1
0.2222
p.N32D
DO223720
LUSC
ICGC
VKTSS
DEG_SPOP_SBC_1
0.2222
p.D35N
TCGA-DK-A1A3
BLCA
TCGA
VKTSS
DEG_SPOP_SBC_1
0.3056
p.D35N
DO558
BLCA
ICGC
VKTSS
DEG_SPOP_SBC_1
0.3056
p.S39C
TCGA-IR-A3LA
CESC
TCGA
VKTSS
DEG_SPOP_SBC_1
0.8652
p.S39C
DO44377
CESC
ICGC
VKTSS
DEG_SPOP_SBC_1
0.8652
Drug responses associated with GTF3C2 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of VKTSS
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O60281
Zinc finger protein 292
DEG_SPOP_SBC_1
1054:1058
VKTSS
SPOP
0.9214
More...
Q5SW79
Centrosomal protein of 170 kDa
DEG_SPOP_SBC_1
1466:1470
VKTSS
SPOP
0.6301
More...
Q5XKE5
Keratin, type II cytoskeletal 79
DEG_SPOP_SBC_1
528:532
VKTSS
SPOP
0.6487
More...
Q8WUA4
General transcription factor 3C polypeptide 2
DEG_SPOP_SBC_1
36:40
VKTSS
SPOP
0.7835
More...
Q8WWK9
Cytoskeleton-associated protein 2
DEG_SPOP_SBC_1
300:304
VKTSS
SPOP
0.9861
More...
Q96L14
Cep170-like protein
DEG_SPOP_SBC_1
175:179
VKTSS
SPOP
0.8196
More...
Q9UK28
Transmembrane protein 59-like
DEG_SPOP_SBC_1
237:241
VKTSS
SPOP
0.8378
More...