DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
VLSST
Uniprot ID:
Q99081
Source protein:
Transcription factor 12
Source gene:
TCF12
Class:
DEG_SPOP_SBC_1
Location:
482:486
E3 ligase:
SPOP
DEGRON score:
0.999
ASA_SCORE:
78.16
COIL:
0.8666
CONS_SCORE:
0.3898
DSS_SCORE:
0.5171
HELIX:
0.0646
FCONS_SCORE:
1.1248
RIG_SCORE:
0.6778
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.L480F
TCGA-2W-A8YY
CESC
TCGA
VLSST
DEG_SPOP_SBC_1
0.2778
p.R494W
TCGA-AA-A022
COAD
TCGA
VLSST
DEG_SPOP_SBC_1
0.1111
p.R494L
TCGA-EE-A184
SKCM
TCGA
VLSST
DEG_SPOP_SBC_1
0.1111
p.G476A
TCGA-XF-A9SK
BLCA
TCGA
VLSST
DEG_SPOP_SBC_1
0.1667
p.Q476E
DO461
BLCA
ICGC
VLSST
DEG_SPOP_SBC_1
0.1667
p.L472R
DO50864
LICA
ICGC
VLSST
DEG_SPOP_SBC_1
0.0556
p.L472F
DO220890
MELA
ICGC
VLSST
DEG_SPOP_SBC_1
0.0556
p.L474I
DO43682
UCEC
ICGC
VLSST
DEG_SPOP_SBC_1
0.1111
p.A479V
DO41752
UCEC
ICGC
VLSST
DEG_SPOP_SBC_1
0.25
p.A479V
CW-2
large_intestine
COSMIC
VLSST
DEG_SPOP_SBC_1
0.25
p.A482V
SIDM00875
Breast Carcinoma
GDSC
VLSST
DEG_SPOP_SBC_1
0.6936
p.A482V
ACH-000624
Breast Cancer
CCLE
VLSST
DEG_SPOP_SBC_1
0.6936
p.A482V
HCC1806
breast
COSMIC
VLSST
DEG_SPOP_SBC_1
0.6936
p.R485Q
SIDM01105
Melanoma
GDSC
VLSST
DEG_SPOP_SBC_1
0.7329
p.R485Q
SIDM01433
Kidney Carcinoma
GDSC
VLSST
DEG_SPOP_SBC_1
0.7329
p.R485Q
SK-MEL-3
skin
COSMIC
VLSST
DEG_SPOP_SBC_1
0.7329
p.N492Y
NCI-H64
lung
COSMIC
VLSST
DEG_SPOP_SBC_1
0.1667
p.N492Y
NCI-H1436
lung
COSMIC
VLSST
DEG_SPOP_SBC_1
0.1667
p.N495K
HDQ-P1
breast
COSMIC
VLSST
DEG_SPOP_SBC_1
0.0833
Drug responses associated with TCF12 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of VLSST
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
P18848
Cyclic AMP-dependent transcription factor ATF-4
DEG_SPOP_SBC_1
169:173
VLSST
SPOP
0.9689
More...
Q14940
Sodium/hydrogen exchanger 5
DEG_SPOP_SBC_1
546:550
VLSST
SPOP
0.6553
More...
Q16890
Tumor protein D53
DEG_SPOP_SBC_1
178:182
VLSST
SPOP
0.9655
More...
Q8IZQ8
Myocardin
DEG_SPOP_SBC_1
623:627
VLSST
SPOP
0.8694
More...
Q8NI08
Nuclear receptor coactivator 7
DEG_SPOP_SBC_1
206:210
VLSST
SPOP
0.9703
More...
Q99081
Transcription factor 12
DEG_SPOP_SBC_1
482:486
VLSST
SPOP
0.999
More...
Q9NS87
Kinesin-like protein KIF15
DEG_SPOP_SBC_1
53:57
VLSST
SPOP
0.9169
More...