DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
VLTTT
Uniprot ID:
Q6UX71
Source protein:
Plexin domain-containing protein 2
Source gene:
PLXDC2
Class:
DEG_SPOP_SBC_1
Location:
405:409
E3 ligase:
SPOP
DEGRON score:
0.9915
ASA_SCORE:
86.64
COIL:
0.834
CONS_SCORE:
0.3295
DSS_SCORE:
0.4658
HELIX:
0.0534
FCONS_SCORE:
1.1298
RIG_SCORE:
0.8783
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.L406P
TCGA-96-A4JK
LUSC
TCGA
VLTTT
DEG_SPOP_SBC_1
0.6471
p.A398V
TCGA-A5-A0G1
UCEC
TCGA
VLTTT
DEG_SPOP_SBC_1
0.1389
p.A398V
TCGA-AP-A051
UCEC
TCGA
VLTTT
DEG_SPOP_SBC_1
0.1389
p.R404S
TCGA-AA-3856
COAD
TCGA
VLTTT
DEG_SPOP_SBC_1
0.3056
p.R404S
TCGA-D3-A1Q3
SKCM
TCGA
VLTTT
DEG_SPOP_SBC_1
0.3056
p.T414N
TCGA-CA-6717
COAD
TCGA
VLTTT
DEG_SPOP_SBC_1
0.6389
p.T408A
TCGA-FI-A2F4
UCEC
TCGA
VLTTT
DEG_SPOP_SBC_1
0.7139
p.R410I
TCGA-HG-A2PA
CESC
TCGA
VLTTT
DEG_SPOP_SBC_1
0.3056
p.P418S
TCGA-IH-A3EA
SKCM
TCGA
VLTTT
DEG_SPOP_SBC_1
0.0833
p.I409V
DO229010
COCA
ICGC
VLTTT
DEG_SPOP_SBC_1
0.7076
p.I409V
DO229013
COCA
ICGC
VLTTT
DEG_SPOP_SBC_1
0.7076
p.I409V
DO229003
COCA
ICGC
VLTTT
DEG_SPOP_SBC_1
0.7076
p.I409V
DO229005
COCA
ICGC
VLTTT
DEG_SPOP_SBC_1
0.7076
p.I409V
DO229346
LAML
ICGC
VLTTT
DEG_SPOP_SBC_1
0.7076
p.I409V
DO225404
LAML
ICGC
VLTTT
DEG_SPOP_SBC_1
0.7076
p.I409V
DO228947
LICA
ICGC
VLTTT
DEG_SPOP_SBC_1
0.7076
p.A405T
DO233766
GACA
ICGC
VLTTT
DEG_SPOP_SBC_1
0.7139
p.A405T
DO23156
LINC
ICGC
VLTTT
DEG_SPOP_SBC_1
0.7139
p.A405T
DO45087
LINC
ICGC
VLTTT
DEG_SPOP_SBC_1
0.7139
p.A405T
PANC-02-03
pancreas
COSMIC
VLTTT
DEG_SPOP_SBC_1
0.7139
p.A419S
DO229034
LICA
ICGC
VLTTT
DEG_SPOP_SBC_1
0.5
p.A405S
DO24739
LUAD
ICGC
VLTTT
DEG_SPOP_SBC_1
0.7588
p.E397D
DO51690
PAAD
ICGC
VLTTT
DEG_SPOP_SBC_1
0.1111
p.L403I
DO43186
UCEC
ICGC
VLTTT
DEG_SPOP_SBC_1
0.2778
p.L414M
DO41752
UCEC
ICGC
VLTTT
DEG_SPOP_SBC_1
0.6389
p.T409I
SIDM01163
Non-Small Cell Lung Carcinoma
GDSC
VLTTT
DEG_SPOP_SBC_1
0.7078
p.T409I
ACH-000677
Lung Cancer
CCLE
VLTTT
DEG_SPOP_SBC_1
0.7078
p.T409I
SW1573
lung
COSMIC
VLTTT
DEG_SPOP_SBC_1
0.7078
p.R411K
SIDM00545
Melanoma
GDSC
VLTTT
DEG_SPOP_SBC_1
0.2778
p.R411K
ACH-000987
Skin Cancer
CCLE
VLTTT
DEG_SPOP_SBC_1
0.2778
p.R411K
Mewo
skin
COSMIC
VLTTT
DEG_SPOP_SBC_1
0.2778
p.P418L
SIDM01175
Other Sarcomas
GDSC
VLTTT
DEG_SPOP_SBC_1
0.0833
p.P418L
ACH-002309
Sarcoma
CCLE
VLTTT
DEG_SPOP_SBC_1
0.0833
p.P418L
SW684
soft_tissue
COSMIC
VLTTT
DEG_SPOP_SBC_1
0.0833
p.R404G
SIDM00164
Biliary Tract Carcinoma
GDSC
VLTTT
DEG_SPOP_SBC_1
0.3056
p.R404G
ACH-000209
Bile Duct Cancer
CCLE
VLTTT
DEG_SPOP_SBC_1
0.3056
p.V413A
SIDM01424
B-Lymphoblastic Leukemia
GDSC
VLTTT
DEG_SPOP_SBC_1
0.2222
p.V413A
ACH-000782
Leukemia
CCLE
VLTTT
DEG_SPOP_SBC_1
0.2222
p.V413A
ACH-001735
Leukemia
CCLE
VLTTT
DEG_SPOP_SBC_1
0.2222
p.T402A
A375
skin
COSMIC
VLTTT
DEG_SPOP_SBC_1
0.25
p.I413F
PE/CA-PJ15
upper_aerodigestive_tract
COSMIC
VLTTT
DEG_SPOP_SBC_1
0.2222
Drug responses associated with PLXDC2 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of VLTTT
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O75122
CLIP-associating protein 2
DEG_SPOP_SBC_1
467:471
VLTTT
SPOP
0.8497
More...
Q6UX71
Plexin domain-containing protein 2
DEG_SPOP_SBC_1
405:409
VLTTT
SPOP
0.9915
More...
Q9HC84
Mucin-5B
DEG_SPOP_SBC_1
1938:1942
VLTTT
SPOP
0.9657
More...
Q9HC84
Mucin-5B
DEG_SPOP_SBC_1
2161:2165
VLTTT
SPOP
0.9474
More...
Q9HC84
Mucin-5B
DEG_SPOP_SBC_1
2579:2583
VLTTT
SPOP
0.8775
More...
Q9HC84
Mucin-5B
DEG_SPOP_SBC_1
2608:2612
VLTTT
SPOP
0.9605
More...
Q9HC84
Mucin-5B
DEG_SPOP_SBC_1
2661:2665
VLTTT
SPOP
0.9314
More...
Q9HC84
Mucin-5B
DEG_SPOP_SBC_1
2718:2722
VLTTT
SPOP
0.8929
More...
Q9HC84
Mucin-5B
DEG_SPOP_SBC_1
3279:3283
VLTTT
SPOP
0.9759
More...
Q9HC84
Mucin-5B
DEG_SPOP_SBC_1
3361:3365
VLTTT
SPOP
0.818
More...
Q9HC84
Mucin-5B
DEG_SPOP_SBC_1
3418:3422
VLTTT
SPOP
0.9812
More...
Q9HC84
Mucin-5B
DEG_SPOP_SBC_1
3836:3840
VLTTT
SPOP
0.5559
More...
Q9HC84
Mucin-5B
DEG_SPOP_SBC_1
3918:3922
VLTTT
SPOP
0.835
More...
Q9HC84
Mucin-5B
DEG_SPOP_SBC_1
3975:3979
VLTTT
SPOP
0.8129
More...
Q9HC84
Mucin-5B
DEG_SPOP_SBC_1
4651:4655
VLTTT
SPOP
0.812
More...
Q9HC84
Mucin-5B
DEG_SPOP_SBC_1
4792:4796
VLTTT
SPOP
0.9603
More...
Q9UHK0
Nuclear fragile X mental retardation-interacting protein 1
DEG_SPOP_SBC_1
269:273
VLTTT
SPOP
0.9948
More...