DegronMD: protein-targeted degradation, mutation and drug response to degrons
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CGC
Degron:
VNTSS
Uniprot ID:
O94913
Source protein:
Pre-mRNA cleavage complex 2 protein Pcf11
Source gene:
PCF11
Class:
DEG_SPOP_SBC_1
Location:
154:158
E3 ligase:
SPOP
DEGRON score:
0.9935
ASA_SCORE:
77.78
COIL:
0.9096
CONS_SCORE:
0.3215
DSS_SCORE:
0.393
HELIX:
0.028
FCONS_SCORE:
0.7544
RIG_SCORE:
0.6667
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.T156M
TCGA-AP-A051
UCEC
TCGA
VNTSS
DEG_SPOP_SBC_1
0.7423
p.T156M
DO232761
PBCA
ICGC
VNTSS
DEG_SPOP_SBC_1
0.7423
p.T156M
DO42673
UCEC
ICGC
VNTSS
DEG_SPOP_SBC_1
0.7423
p.P163T
TCGA-EE-A29G
SKCM
TCGA
VNTSS
DEG_SPOP_SBC_1
0.1944
p.P163T
DO47303
SKCM
ICGC
VNTSS
DEG_SPOP_SBC_1
0.1944
p.P163H
TCGA-GN-A262
SKCM
TCGA
VNTSS
DEG_SPOP_SBC_1
0.1944
p.P163H
DO37515
SKCM
ICGC
VNTSS
DEG_SPOP_SBC_1
0.1944
p.V154A
DO230343
COCA
ICGC
VNTSS
DEG_SPOP_SBC_1
0.5825
p.A144V
DO231837
LINC
ICGC
VNTSS
DEG_SPOP_SBC_1
0.0556
p.N162Y
DO228176
PBCA
ICGC
VNTSS
DEG_SPOP_SBC_1
0.2222
p.P146R
SIDM00704
Small Cell Lung Carcinoma
GDSC
VNTSS
DEG_SPOP_SBC_1
0.1111
p.P146R
ACH-000639
Lung Cancer
CCLE
VNTSS
DEG_SPOP_SBC_1
0.1111
p.P146R
NCI-H211
lung
COSMIC
VNTSS
DEG_SPOP_SBC_1
0.1111
Drug responses associated with PCF11 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of VNTSS
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
P09619
Platelet-derived growth factor receptor beta
DEG_SPOP_SBC_1
1052:1056
VNTSS
SPOP
0.9079
More...
Q8IZP9
Adhesion G-protein coupled receptor G2
DEG_SPOP_SBC_1
369:373
VNTSS
SPOP
0.9386
More...
Q8TAX7
Mucin-7
DEG_SPOP_SBC_1
145:149
VNTSS
SPOP
0.9158
More...
Q8WWK9
Cytoskeleton-associated protein 2
DEG_SPOP_SBC_1
221:225
VNTSS
SPOP
0.9787
More...
Q9H6R7
WD repeat and coiled-coil-containing protein
DEG_SPOP_SBC_1
482:486
VNTSS
SPOP
0.7588
More...
O94913
Pre-mRNA cleavage complex 2 protein Pcf11
DEG_SPOP_SBC_1
154:158
VNTSS
SPOP
0.9935
More...
Q96KR1
Zinc finger RNA-binding protein
DEG_SPOP_SBC_1
456:460
VNTSS
SPOP
0.7805
More...
Q6Q759
Sperm-associated antigen 17
DEG_SPOP_SBC_1
11:15
VNTSS
SPOP
0.8744
More...