DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
VNTSS
Uniprot ID:
Q8WWK9
Source protein:
Cytoskeleton-associated protein 2
Source gene:
CKAP2
Class:
DEG_SPOP_SBC_1
Location:
221:225
E3 ligase:
SPOP
DEGRON score:
0.9787
ASA_SCORE:
91.18
COIL:
0.8964
CONS_SCORE:
0.3229
DSS_SCORE:
0.6031
HELIX:
0.0498
FCONS_SCORE:
0.9986
RIG_SCORE:
0.6829
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.P213H
TCGA-BH-A0C0
BRCA
TCGA
VNTSS
DEG_SPOP_SBC_1
0.1111
p.R216W
DO14198
HNSC
ICGC
VNTSS
DEG_SPOP_SBC_1
0.1944
p.R233L
DO228948
LICA
ICGC
VNTSS
DEG_SPOP_SBC_1
0.1111
p.G235W
DO46957
RECA
ICGC
VNTSS
DEG_SPOP_SBC_1
0.0556
p.G222D
DO43755
UCEC
ICGC
VNTSS
DEG_SPOP_SBC_1
0.7198
p.T211S
SIDM01491
Colorectal Carcinoma
GDSC
VNTSS
DEG_SPOP_SBC_1
0.5
p.T211S
ACH-000342
Colon/Colorectal Cancer
CCLE
VNTSS
DEG_SPOP_SBC_1
0.5
p.P220H
ACH-001369
Ovarian Cancer
CCLE
VNTSS
DEG_SPOP_SBC_1
0.3056
p.R233W
22RV1
prostate
COSMIC
VNTSS
DEG_SPOP_SBC_1
0.1111
p.R233Q
SNG-M
endometrium
COSMIC
VNTSS
DEG_SPOP_SBC_1
0.1111
Drug responses associated with CKAP2 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of VNTSS
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
P09619
Platelet-derived growth factor receptor beta
DEG_SPOP_SBC_1
1052:1056
VNTSS
SPOP
0.9079
More...
Q8IZP9
Adhesion G-protein coupled receptor G2
DEG_SPOP_SBC_1
369:373
VNTSS
SPOP
0.9386
More...
Q8TAX7
Mucin-7
DEG_SPOP_SBC_1
145:149
VNTSS
SPOP
0.9158
More...
Q8WWK9
Cytoskeleton-associated protein 2
DEG_SPOP_SBC_1
221:225
VNTSS
SPOP
0.9787
More...
Q9H6R7
WD repeat and coiled-coil-containing protein
DEG_SPOP_SBC_1
482:486
VNTSS
SPOP
0.7588
More...
O94913
Pre-mRNA cleavage complex 2 protein Pcf11
DEG_SPOP_SBC_1
154:158
VNTSS
SPOP
0.9935
More...
Q96KR1
Zinc finger RNA-binding protein
DEG_SPOP_SBC_1
456:460
VNTSS
SPOP
0.7805
More...
Q6Q759
Sperm-associated antigen 17
DEG_SPOP_SBC_1
11:15
VNTSS
SPOP
0.8744
More...