DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
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CGC
Degron:
PRTST
Uniprot ID:
Q9NZN5
Source protein:
Rho guanine nucleotide exchange factor 12
Source gene:
ARHGEF12
Class:
DEG_SPOP_SBC_1
Location:
1328:1332
E3 ligase:
SPOP
DEGRON score:
0.9959
ASA_SCORE:
87.86
COIL:
0.8886
CONS_SCORE:
0.3202
DSS_SCORE:
0.5092
HELIX:
0.0672
FCONS_SCORE:
1.036
RIG_SCORE:
0.7125
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.R1338L
TCGA-95-7039
LUAD
TCGA
PRTST
DEG_SPOP_SBC_1
0.1667
p.R1329Q
TCGA-BR-8487
STAD
TCGA
PRTST
DEG_SPOP_SBC_1
0.6218
p.R1329Q
TCGA-CN-5356
HNSC
TCGA
PRTST
DEG_SPOP_SBC_1
0.6218
p.D1321G
TCGA-EY-A5W2
UCEC
TCGA
PRTST
DEG_SPOP_SBC_1
0.1389
p.R1329L
TCGA-FS-A1ZB
SKCM
TCGA
PRTST
DEG_SPOP_SBC_1
0.7316
p.G1318R
TCGA-HQ-A5NE
BLCA
TCGA
PRTST
DEG_SPOP_SBC_1
0.0556
p.M1342I
DO229018
LICA
ICGC
PRTST
DEG_SPOP_SBC_1
0.0556
p.R1319L
DO23907
LUAD
ICGC
PRTST
DEG_SPOP_SBC_1
0.0833
p.T1324S
SIDM01024
Esophageal Squamous Cell Carcinoma
GDSC
PRTST
DEG_SPOP_SBC_1
0.6667
p.T1324S
ACH-000784
Esophageal Cancer
CCLE
PRTST
DEG_SPOP_SBC_1
0.6667
p.T1324S
KYSE-70
oesophagus
COSMIC
PRTST
DEG_SPOP_SBC_1
0.6667
p.Y1318H
KARPAS-45
haematopoietic_and_lymphoid_tissue
COSMIC
PRTST
DEG_SPOP_SBC_1
0.0556
p.T1335S
SNU-449
liver
COSMIC
PRTST
DEG_SPOP_SBC_1
0.25
p.M1339T
GP5d
large_intestine
COSMIC
PRTST
DEG_SPOP_SBC_1
0.1389
Drug responses associated with ARHGEF12 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of PRTST
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
P98088
Mucin-5AC
DEG_SPOP_SBC_1
3168:3172
PRTST
SPOP
0.987
More...
Q6P2H3
Centrosomal protein of 85 kDa
DEG_SPOP_SBC_1
210:214
PRTST
SPOP
0.9974
More...
Q8NEV8
Exophilin-5
DEG_SPOP_SBC_1
289:293
PRTST
SPOP
0.9967
More...
Q8TAP9
M-phase-specific PLK1-interacting protein
DEG_SPOP_SBC_1
116:120
PRTST
SPOP
0.9988
More...
Q96C45
Serine/threonine-protein kinase ULK4
DEG_SPOP_SBC_1
367:371
PRTST
SPOP
0.8239
More...
Q9NZN5
Rho guanine nucleotide exchange factor 12
DEG_SPOP_SBC_1
1328:1332
PRTST
SPOP
0.9959
More...
Q9NY43
BarH-like 2 homeobox protein
DEG_SPOP_SBC_1
135:139
PRTST
SPOP
0.77
More...
Q92576
PHD finger protein 3
DEG_SPOP_SBC_1
1789:1793
PRTST
SPOP
0.7676
More...