DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
VASTS
Uniprot ID:
Q13485
Source protein:
Mothers against decapentaplegic homolog 4
Source gene:
SMAD4
Class:
DEG_SPOP_SBC_1
Location:
219:223
E3 ligase:
SPOP
DEGRON score:
0.8809
ASA_SCORE:
63.62
COIL:
0.8716
CONS_SCORE:
0.3504
DSS_SCORE:
0.4801
HELIX:
0.0634
FCONS_SCORE:
0.9526
RIG_SCORE:
0.7002
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.P215S
TCGA-86-7713
LUAD
TCGA
VASTS
DEG_SPOP_SBC_1
0.2222
p.P215S
DO24712
LUAD
ICGC
VASTS
DEG_SPOP_SBC_1
0.2222
p.N216T
DO8730
COAD
ICGC
VASTS
DEG_SPOP_SBC_1
0.25
p.V219L
DO46358
OV
ICGC
VASTS
DEG_SPOP_SBC_1
0.6765
p.S232N
SIDM00216
Colorectal Carcinoma
GDSC
VASTS
DEG_SPOP_SBC_1
0.0833
p.S232N
ACH-000989
Colon/Colorectal Cancer
CCLE
VASTS
DEG_SPOP_SBC_1
0.0833
p.S232N
SNU-175
large_intestine
COSMIC
VASTS
DEG_SPOP_SBC_1
0.0833
p.S210N
ACH-000928
Endometrial/Uterine Cancer
CCLE
VASTS
DEG_SPOP_SBC_1
0.0833
p.P218S
ACH-000928
Endometrial/Uterine Cancer
CCLE
VASTS
DEG_SPOP_SBC_1
0.3056
p.Y226H
ACH-000990
Endometrial/Uterine Cancer
CCLE
VASTS
DEG_SPOP_SBC_1
0.25
Drug responses associated with SMAD4 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of VASTS
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O60566
Mitotic checkpoint serine/threonine-protein kinase BUB1 beta
DEG_SPOP_SBC_1
692:696
VASTS
SPOP
0.9993
More...
P55211
Caspase-9
DEG_SPOP_SBC_1
298:302
VASTS
SPOP
0.9605
More...
Q13485
Mothers against decapentaplegic homolog 4
DEG_SPOP_SBC_1
219:223
VASTS
SPOP
0.8809
More...
Q15652
Probable JmjC domain-containing histone demethylation protein 2C
DEG_SPOP_SBC_1
970:974
VASTS
SPOP
0.9754
More...
Q53GL0
Pleckstrin homology domain-containing family O member 1
DEG_SPOP_SBC_1
175:179
VASTS
SPOP
0.863
More...
Q5VX71
Sushi domain-containing protein 4
DEG_SPOP_SBC_1
470:474
VASTS
SPOP
0.9726
More...
Q8TEV9
Guanine nucleotide exchange protein SMCR8
DEG_SPOP_SBC_1
681:685
VASTS
SPOP
0.9888
More...