DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
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Degron:
VASTS
Uniprot ID:
Q8TEV9
Source protein:
Guanine nucleotide exchange protein SMCR8
Source gene:
SMCR8
Class:
DEG_SPOP_SBC_1
Location:
681:685
E3 ligase:
SPOP
DEGRON score:
0.9888
ASA_SCORE:
73.6
COIL:
0.8872
CONS_SCORE:
0.4218
DSS_SCORE:
0.4177
HELIX:
0.068
FCONS_SCORE:
1.0608
RIG_SCORE:
0.673
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.A682T
TCGA-IB-7651
PAAD
TCGA
VASTS
DEG_SPOP_SBC_1
0.6028
p.A682T
DO46657
PAAD
ICGC
VASTS
DEG_SPOP_SBC_1
0.6028
p.I689M
DO230334
COCA
ICGC
VASTS
DEG_SPOP_SBC_1
0.2222
p.P690S
DO38404
STAD
ICGC
VASTS
DEG_SPOP_SBC_1
0.1944
p.S686T
SIDM00586
Hepatocellular Carcinoma
GDSC
VASTS
DEG_SPOP_SBC_1
0.3056
p.S686T
ACH-000475
Liver Cancer
CCLE
VASTS
DEG_SPOP_SBC_1
0.3056
p.S686T
huH-1
liver
COSMIC
VASTS
DEG_SPOP_SBC_1
0.3056
Drug responses associated with SMCR8 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of VASTS
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O60566
Mitotic checkpoint serine/threonine-protein kinase BUB1 beta
DEG_SPOP_SBC_1
692:696
VASTS
SPOP
0.9993
More...
P55211
Caspase-9
DEG_SPOP_SBC_1
298:302
VASTS
SPOP
0.9605
More...
Q13485
Mothers against decapentaplegic homolog 4
DEG_SPOP_SBC_1
219:223
VASTS
SPOP
0.8809
More...
Q15652
Probable JmjC domain-containing histone demethylation protein 2C
DEG_SPOP_SBC_1
970:974
VASTS
SPOP
0.9754
More...
Q53GL0
Pleckstrin homology domain-containing family O member 1
DEG_SPOP_SBC_1
175:179
VASTS
SPOP
0.863
More...
Q5VX71
Sushi domain-containing protein 4
DEG_SPOP_SBC_1
470:474
VASTS
SPOP
0.9726
More...
Q8TEV9
Guanine nucleotide exchange protein SMCR8
DEG_SPOP_SBC_1
681:685
VASTS
SPOP
0.9888
More...