DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
CPH
CGC
Degron:
VASTS
Uniprot ID:
Q5VX71
Source protein:
Sushi domain-containing protein 4
Source gene:
SUSD4
Class:
DEG_SPOP_SBC_1
Location:
470:474
E3 ligase:
SPOP
DEGRON score:
0.9726
ASA_SCORE:
54.18
COIL:
0.7284
CONS_SCORE:
0.9235
DSS_SCORE:
0.6056
HELIX:
0.1674
FCONS_SCORE:
1.152
RIG_SCORE:
0.6701
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.G476D
TCGA-17-Z042
LUAD
TCGA
VASTS
DEG_SPOP_SBC_1
0.2778
p.P484T
TCGA-AA-A010
COAD
TCGA
VASTS
DEG_SPOP_SBC_1
0.0556
p.T466M
TCGA-AX-A2HG
UCEC
TCGA
VASTS
DEG_SPOP_SBC_1
0.2222
p.T466M
SIDM00238
Ovarian Carcinoma
GDSC
VASTS
DEG_SPOP_SBC_1
0.2222
p.T466M
OVK-18
ovary
COSMIC
VASTS
DEG_SPOP_SBC_1
0.2222
p.E468K
TCGA-D3-A8GM
SKCM
TCGA
VASTS
DEG_SPOP_SBC_1
0.2778
p.E469K
TCGA-ER-A194
SKCM
TCGA
VASTS
DEG_SPOP_SBC_1
0.3056
p.S472F
TCGA-HF-7132
STAD
TCGA
VASTS
DEG_SPOP_SBC_1
0.7982
p.A464S
SIDM00672
Hepatocellular Carcinoma
GDSC
VASTS
DEG_SPOP_SBC_1
0.1667
p.A464S
SIDM01126
Small Cell Lung Carcinoma
GDSC
VASTS
DEG_SPOP_SBC_1
0.1667
p.A464S
SIDM00746
Non-Small Cell Lung Carcinoma
GDSC
VASTS
DEG_SPOP_SBC_1
0.1667
p.A464S
SIDM00285
Neuroblastoma
GDSC
VASTS
DEG_SPOP_SBC_1
0.1667
p.A464S
SIDM00976
Melanoma
GDSC
VASTS
DEG_SPOP_SBC_1
0.1667
p.A471P
SIDM01140
Ovarian Carcinoma
GDSC
VASTS
DEG_SPOP_SBC_1
0.6392
Drug responses associated with SUSD4 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of VASTS
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O60566
Mitotic checkpoint serine/threonine-protein kinase BUB1 beta
DEG_SPOP_SBC_1
692:696
VASTS
SPOP
0.9993
More...
P55211
Caspase-9
DEG_SPOP_SBC_1
298:302
VASTS
SPOP
0.9605
More...
Q13485
Mothers against decapentaplegic homolog 4
DEG_SPOP_SBC_1
219:223
VASTS
SPOP
0.8809
More...
Q15652
Probable JmjC domain-containing histone demethylation protein 2C
DEG_SPOP_SBC_1
970:974
VASTS
SPOP
0.9754
More...
Q53GL0
Pleckstrin homology domain-containing family O member 1
DEG_SPOP_SBC_1
175:179
VASTS
SPOP
0.863
More...
Q5VX71
Sushi domain-containing protein 4
DEG_SPOP_SBC_1
470:474
VASTS
SPOP
0.9726
More...
Q8TEV9
Guanine nucleotide exchange protein SMCR8
DEG_SPOP_SBC_1
681:685
VASTS
SPOP
0.9888
More...