DegronMD: protein-targeted degradation, mutation and drug response to degrons
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CGC
Degron:
VCSSS
Uniprot ID:
Q8N1W1
Source protein:
Rho guanine nucleotide exchange factor 28
Source gene:
ARHGEF28
Class:
DEG_SPOP_SBC_1
Location:
577:581
E3 ligase:
SPOP
DEGRON score:
0.9989
ASA_SCORE:
70.62
COIL:
0.7774
CONS_SCORE:
0.3029
DSS_SCORE:
0.344
HELIX:
0.163
FCONS_SCORE:
1.0112
RIG_SCORE:
0.7347
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.S590L
TCGA-76-6285
GBM
TCGA
VCSSS
DEG_SPOP_SBC_1
0.5278
p.S590L
TCGA-VQ-A91K
STAD
TCGA
VCSSS
DEG_SPOP_SBC_1
0.5278
p.S590L
DO11962
GBM
ICGC
VCSSS
DEG_SPOP_SBC_1
0.5278
p.S590L
DO51785
STAD
ICGC
VCSSS
DEG_SPOP_SBC_1
0.5278
p.E583D
TCGA-78-7147
LUAD
TCGA
VCSSS
DEG_SPOP_SBC_1
0.2778
p.E583D
DO24527
LUAD
ICGC
VCSSS
DEG_SPOP_SBC_1
0.2778
p.R585K
DO229013
COCA
ICGC
VCSSS
DEG_SPOP_SBC_1
0.2222
p.R585K
DO229003
COCA
ICGC
VCSSS
DEG_SPOP_SBC_1
0.2222
p.R585K
DO229047
LICA
ICGC
VCSSS
DEG_SPOP_SBC_1
0.2222
p.R585K
DO230529
LUSC
ICGC
VCSSS
DEG_SPOP_SBC_1
0.2222
p.R585K
DO230993
LUSC
ICGC
VCSSS
DEG_SPOP_SBC_1
0.2222
p.R585K
DO230990
LUSC
ICGC
VCSSS
DEG_SPOP_SBC_1
0.2222
p.R585K
DO231007
LUSC
ICGC
VCSSS
DEG_SPOP_SBC_1
0.2222
p.R570L
DO229022
LICA
ICGC
VCSSS
DEG_SPOP_SBC_1
0.1389
p.A586S
DO229022
LICA
ICGC
VCSSS
DEG_SPOP_SBC_1
0.1944
p.L575F
SIDM00084
Glioblastoma
GDSC
VCSSS
DEG_SPOP_SBC_1
0.2778
p.L575F
SIDM01109
Other Sarcomas
GDSC
VCSSS
DEG_SPOP_SBC_1
0.2778
p.L575F
SIDM00742
Non-Small Cell Lung Carcinoma
GDSC
VCSSS
DEG_SPOP_SBC_1
0.2778
p.R573C
SIDM00447
B-Lymphoblastic Leukemia
GDSC
VCSSS
DEG_SPOP_SBC_1
0.2222
p.R573C
SIDM00136
Colorectal Carcinoma
GDSC
VCSSS
DEG_SPOP_SBC_1
0.2222
p.R573C
SIDM00861
Ovarian Carcinoma
GDSC
VCSSS
DEG_SPOP_SBC_1
0.2222
p.K568R
SIDM00755
Non-Small Cell Lung Carcinoma
GDSC
VCSSS
DEG_SPOP_SBC_1
0.1944
p.K568R
ACH-000888
Lung Cancer
CCLE
VCSSS
DEG_SPOP_SBC_1
0.1944
p.K568R
NCI-H1793
lung
COSMIC
VCSSS
DEG_SPOP_SBC_1
0.1944
p.T579M
CW-2
large_intestine
COSMIC
VCSSS
DEG_SPOP_SBC_1
0.7423
p.H591R
NCI-H2141
lung
COSMIC
VCSSS
DEG_SPOP_SBC_1
0.0556
Drug responses associated with ARHGEF28 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of VCSSS
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q8N1W1
Rho guanine nucleotide exchange factor 28
DEG_SPOP_SBC_1
577:581
VCSSS
SPOP
0.9989
More...
Q96QB1
Rho GTPase-activating protein 7
DEG_SPOP_SBC_1
624:628
VCSSS
SPOP
0.9791
More...
Q9C0D2
Centrosomal protein of 295 kDa
DEG_SPOP_SBC_1
1546:1550
VCSSS
SPOP
0.8548
More...
Q9NWQ4
G patch domain-containing protein 2-like
DEG_SPOP_SBC_1
226:230
VCSSS
SPOP
0.9077
More...
Q9ULJ3
Zinc finger and BTB domain-containing protein 21
DEG_SPOP_SBC_1
282:286
VCSSS
SPOP
0.9458
More...
Q9Y6Q6
Tumor necrosis factor receptor superfamily member 11A
DEG_SPOP_SBC_1
193:197
VCSSS
SPOP
0.5093
More...
O15016
Tripartite motif-containing protein 66
DEG_SPOP_SBC_1
315:319
VCSSS
SPOP
0.632
More...