DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
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CGC
Degron:
VCSSS
Uniprot ID:
Q9NWQ4
Source protein:
G patch domain-containing protein 2-like
Source gene:
GPATCH2L
Class:
DEG_SPOP_SBC_1
Location:
226:230
E3 ligase:
SPOP
DEGRON score:
0.9077
ASA_SCORE:
80.58
COIL:
0.8924
CONS_SCORE:
0.7104
DSS_SCORE:
0.4915
HELIX:
0.0668
FCONS_SCORE:
0.9638
RIG_SCORE:
0.6683
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.G240W
TCGA-46-3767
LUSC
TCGA
VCSSS
DEG_SPOP_SBC_1
0.0556
p.G240W
DO26650
LUSC
ICGC
VCSSS
DEG_SPOP_SBC_1
0.0556
p.G233V
TCGA-49-6767
LUAD
TCGA
VCSSS
DEG_SPOP_SBC_1
0.25
p.G233V
DO23586
LUAD
ICGC
VCSSS
DEG_SPOP_SBC_1
0.25
p.S228I
TCGA-A5-A0G1
UCEC
TCGA
VCSSS
DEG_SPOP_SBC_1
0.7341
p.S228I
DO42472
UCEC
ICGC
VCSSS
DEG_SPOP_SBC_1
0.7341
p.S224R
TCGA-CV-5432
HNSC
TCGA
VCSSS
DEG_SPOP_SBC_1
0.2778
p.S224R
DO14343
HNSC
ICGC
VCSSS
DEG_SPOP_SBC_1
0.2778
p.V226M
DO233888
GACA
ICGC
VCSSS
DEG_SPOP_SBC_1
0.7208
p.S224I
DO228948
LICA
ICGC
VCSSS
DEG_SPOP_SBC_1
0.2778
p.S224I
DO229027
LICA
ICGC
VCSSS
DEG_SPOP_SBC_1
0.2778
p.S229I
DO228974
LICA
ICGC
VCSSS
DEG_SPOP_SBC_1
0.7341
p.S219L
DO47092
RECA
ICGC
VCSSS
DEG_SPOP_SBC_1
0.1389
p.D238G
SIDM00155
Head and Neck Carcinoma
GDSC
VCSSS
DEG_SPOP_SBC_1
0.1111
p.D238G
ACH-002296
Head and Neck Cancer
CCLE
VCSSS
DEG_SPOP_SBC_1
0.1111
p.D238G
PCI-38
upper_aerodigestive_tract
COSMIC
VCSSS
DEG_SPOP_SBC_1
0.1111
Drug responses associated with GPATCH2L mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of VCSSS
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q8N1W1
Rho guanine nucleotide exchange factor 28
DEG_SPOP_SBC_1
577:581
VCSSS
SPOP
0.9989
More...
Q96QB1
Rho GTPase-activating protein 7
DEG_SPOP_SBC_1
624:628
VCSSS
SPOP
0.9791
More...
Q9C0D2
Centrosomal protein of 295 kDa
DEG_SPOP_SBC_1
1546:1550
VCSSS
SPOP
0.8548
More...
Q9NWQ4
G patch domain-containing protein 2-like
DEG_SPOP_SBC_1
226:230
VCSSS
SPOP
0.9077
More...
Q9ULJ3
Zinc finger and BTB domain-containing protein 21
DEG_SPOP_SBC_1
282:286
VCSSS
SPOP
0.9458
More...
Q9Y6Q6
Tumor necrosis factor receptor superfamily member 11A
DEG_SPOP_SBC_1
193:197
VCSSS
SPOP
0.5093
More...
O15016
Tripartite motif-containing protein 66
DEG_SPOP_SBC_1
315:319
VCSSS
SPOP
0.632
More...