DegronMD: protein-targeted degradation, mutation and drug response to degrons
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CGC
Degron:
VCSSS
Uniprot ID:
Q96QB1
Source protein:
Rho GTPase-activating protein 7
Source gene:
DLC1
Class:
DEG_SPOP_SBC_1
Location:
624:628
E3 ligase:
SPOP
DEGRON score:
0.9791
ASA_SCORE:
67.24
COIL:
0.7676
CONS_SCORE:
0.3988
DSS_SCORE:
0.4533
HELIX:
0.1006
FCONS_SCORE:
1.1256
RIG_SCORE:
0.7237
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.P616H
TCGA-56-8083
LUSC
TCGA
VCSSS
DEG_SPOP_SBC_1
0.1111
p.P616H
DO223723
LUSC
ICGC
VCSSS
DEG_SPOP_SBC_1
0.1111
p.G638V
TCGA-AA-3986
COAD
TCGA
VCSSS
DEG_SPOP_SBC_1
0.0556
p.R617Q
TCGA-BG-A0VW
UCEC
TCGA
VCSSS
DEG_SPOP_SBC_1
0.1389
p.R617Q
SIDM01664
Prostate Carcinoma
GDSC
VCSSS
DEG_SPOP_SBC_1
0.1389
p.G638D
TCGA-BR-4357
STAD
TCGA
VCSSS
DEG_SPOP_SBC_1
0.0556
p.G638D
DO38241
STAD
ICGC
VCSSS
DEG_SPOP_SBC_1
0.0556
p.S620F
TCGA-D3-A3MV
SKCM
TCGA
VCSSS
DEG_SPOP_SBC_1
0.2222
p.S620F
TCGA-D3-A5GO
SKCM
TCGA
VCSSS
DEG_SPOP_SBC_1
0.2222
p.S620F
SIDM00974
Melanoma
GDSC
VCSSS
DEG_SPOP_SBC_1
0.2222
p.S620F
ACH-002207
Skin Cancer
CCLE
VCSSS
DEG_SPOP_SBC_1
0.2222
p.S620F
WM35
skin
COSMIC
VCSSS
DEG_SPOP_SBC_1
0.2222
p.A614T
TCGA-GU-AATO
BLCA
TCGA
VCSSS
DEG_SPOP_SBC_1
0.0556
p.V624I
TCGA-MT-A51X
HNSC
TCGA
VCSSS
DEG_SPOP_SBC_1
0.7076
p.V624I
DO44441
HNSC
ICGC
VCSSS
DEG_SPOP_SBC_1
0.7076
p.G620C
DO47299
SKCM
ICGC
VCSSS
DEG_SPOP_SBC_1
0.2222
p.P631S
DO42023
UCEC
ICGC
VCSSS
DEG_SPOP_SBC_1
0.25
p.V621I
SIDM00216
Colorectal Carcinoma
GDSC
VCSSS
DEG_SPOP_SBC_1
0.25
p.V621I
ACH-000989
Colon/Colorectal Cancer
CCLE
VCSSS
DEG_SPOP_SBC_1
0.25
p.V621I
SNU-175
large_intestine
COSMIC
VCSSS
DEG_SPOP_SBC_1
0.25
p.I622V
SIDM00652
Small Cell Lung Carcinoma
GDSC
VCSSS
DEG_SPOP_SBC_1
0.2778
p.I622V
ACH-000780
Lung Cancer
CCLE
VCSSS
DEG_SPOP_SBC_1
0.2778
p.I622V
NCI-H1105
lung
COSMIC
VCSSS
DEG_SPOP_SBC_1
0.2778
p.S626F
SIDM00638
Cervical Carcinoma
GDSC
VCSSS
DEG_SPOP_SBC_1
0.7982
p.S626F
ACH-001360
Cervical Cancer
CCLE
VCSSS
DEG_SPOP_SBC_1
0.7982
p.S626F
MS751
cervix
COSMIC
VCSSS
DEG_SPOP_SBC_1
0.7982
p.V622A
HCT-116
large_intestine
COSMIC
VCSSS
DEG_SPOP_SBC_1
0.2778
p.A620D
DG-75
haematopoietic_and_lymphoid_tissue
COSMIC
VCSSS
DEG_SPOP_SBC_1
0.2222
p.E628G
CCK-81
large_intestine
COSMIC
VCSSS
DEG_SPOP_SBC_1
0.7199
Drug responses associated with DLC1 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of VCSSS
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q8N1W1
Rho guanine nucleotide exchange factor 28
DEG_SPOP_SBC_1
577:581
VCSSS
SPOP
0.9989
More...
Q96QB1
Rho GTPase-activating protein 7
DEG_SPOP_SBC_1
624:628
VCSSS
SPOP
0.9791
More...
Q9C0D2
Centrosomal protein of 295 kDa
DEG_SPOP_SBC_1
1546:1550
VCSSS
SPOP
0.8548
More...
Q9NWQ4
G patch domain-containing protein 2-like
DEG_SPOP_SBC_1
226:230
VCSSS
SPOP
0.9077
More...
Q9ULJ3
Zinc finger and BTB domain-containing protein 21
DEG_SPOP_SBC_1
282:286
VCSSS
SPOP
0.9458
More...
Q9Y6Q6
Tumor necrosis factor receptor superfamily member 11A
DEG_SPOP_SBC_1
193:197
VCSSS
SPOP
0.5093
More...
O15016
Tripartite motif-containing protein 66
DEG_SPOP_SBC_1
315:319
VCSSS
SPOP
0.632
More...