DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
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CGC
Degron:
VVTST
Uniprot ID:
P25940
Source protein:
Collagen alpha-3
Source gene:
COL5A3
Class:
DEG_SPOP_SBC_1
Location:
306:310
E3 ligase:
SPOP
DEGRON score:
0.9957
ASA_SCORE:
74.02
COIL:
0.8814
CONS_SCORE:
0.2759
DSS_SCORE:
0.5569
HELIX:
0.0238
FCONS_SCORE:
0.985
RIG_SCORE:
0.798
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.P299L
TCGA-29-1691
OV
TCGA
VVTST
DEG_SPOP_SBC_1
0.1389
p.P299L
DO32133
OV
ICGC
VVTST
DEG_SPOP_SBC_1
0.1389
p.V311L
TCGA-A5-A0R6
UCEC
TCGA
VVTST
DEG_SPOP_SBC_1
0.3056
p.V311L
DO41145
UCEC
ICGC
VVTST
DEG_SPOP_SBC_1
0.3056
p.T313A
TCGA-C5-A1MH
CESC
TCGA
VVTST
DEG_SPOP_SBC_1
0.25
p.T313A
DO48982
CESC
ICGC
VVTST
DEG_SPOP_SBC_1
0.25
p.T303M
TCGA-EA-A3HS
CESC
TCGA
VVTST
DEG_SPOP_SBC_1
0.25
p.T303M
DO6260
CESC
ICGC
VVTST
DEG_SPOP_SBC_1
0.25
p.T303M
SIDM00549
B-Lymphoblastic Leukemia
GDSC
VVTST
DEG_SPOP_SBC_1
0.25
p.T303M
ACH-002267
Leukemia
CCLE
VVTST
DEG_SPOP_SBC_1
0.25
p.T303M
LC4-1
haematopoietic_and_lymphoid_tissue
COSMIC
VVTST
DEG_SPOP_SBC_1
0.25
p.P296L
TCGA-EE-A29S
SKCM
TCGA
VVTST
DEG_SPOP_SBC_1
0.0556
p.P296L
DO37936
SKCM
ICGC
VVTST
DEG_SPOP_SBC_1
0.0556
p.S309F
TCGA-Z2-A8RT
SKCM
TCGA
VVTST
DEG_SPOP_SBC_1
0.7982
p.S309F
DO51301
SKCM
ICGC
VVTST
DEG_SPOP_SBC_1
0.7982
p.V306F
DO49166
PACA
ICGC
VVTST
DEG_SPOP_SBC_1
0.7068
Drug responses associated with COL5A3 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of VVTST
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
P15408
Fos-related antigen 2
DEG_SPOP_SBC_1
266:270
VVTST
SPOP
0.9977
More...
P25940
Collagen alpha-3
DEG_SPOP_SBC_1
306:310
VVTST
SPOP
0.9957
More...
Q685J3
Mucin-17
DEG_SPOP_SBC_1
2546:2550
VVTST
SPOP
0.7708
More...
Q8NFC6
Biorientation of chromosomes in cell division protein 1-like 1
DEG_SPOP_SBC_1
1870:1874
VVTST
SPOP
0.9754
More...
Q8WZ42
Titin
DEG_SPOP_SBC_1
15779:15783
VVTST
SPOP
0.5021
More...
Q96L42
Potassium voltage-gated channel subfamily H member 8
DEG_SPOP_SBC_1
1092:1096
VVTST
SPOP
0.7903
More...
Q9P266
Junctional protein associated with coronary artery disease
DEG_SPOP_SBC_1
1181:1185
VVTST
SPOP
0.6941
More...