DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
CPH
CGC
Degron:
VVTST
Uniprot ID:
Q96L42
Source protein:
Potassium voltage-gated channel subfamily H member 8
Source gene:
KCNH8
Class:
DEG_SPOP_SBC_1
Location:
1092:1096
E3 ligase:
SPOP
DEGRON score:
0.7903
ASA_SCORE:
61.42
COIL:
0.6344
CONS_SCORE:
0.4415
DSS_SCORE:
0.3893
HELIX:
0.0828
FCONS_SCORE:
1.11
RIG_SCORE:
0.8049
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.N1106K
TCGA-79-5596
LUSC
TCGA
VVTST
DEG_SPOP_SBC_1
0.0556
p.N1106K
DO27357
LUSC
ICGC
VVTST
DEG_SPOP_SBC_1
0.0556
p.N1102K
TCGA-95-7039
LUAD
TCGA
VVTST
DEG_SPOP_SBC_1
0.1667
p.N1102K
DO23907
LUAD
ICGC
VVTST
DEG_SPOP_SBC_1
0.1667
p.D1101Y
TCGA-CN-A497
HNSC
TCGA
VVTST
DEG_SPOP_SBC_1
0.1944
p.D1101Y
DO8898
COAD
ICGC
VVTST
DEG_SPOP_SBC_1
0.1944
p.D1101Y
DO218992
HNSC
ICGC
VVTST
DEG_SPOP_SBC_1
0.1944
p.K1103N
TCGA-EO-A3KX
UCEC
TCGA
VVTST
DEG_SPOP_SBC_1
0.25
p.K1103N
DO219774
UCEC
ICGC
VVTST
DEG_SPOP_SBC_1
0.25
p.P1084T
DO48236
ESCA
ICGC
VVTST
DEG_SPOP_SBC_1
0.1111
p.P1089L
SIDM00475
Ovarian Carcinoma
GDSC
VVTST
DEG_SPOP_SBC_1
0.25
p.P1089L
ACH-000091
Ovarian Cancer
CCLE
VVTST
DEG_SPOP_SBC_1
0.25
p.P1089L
OV-56
ovary
COSMIC
VVTST
DEG_SPOP_SBC_1
0.25
p.N1106H
SIDM00282
Colorectal Carcinoma
GDSC
VVTST
DEG_SPOP_SBC_1
0.0556
p.N1106H
ACH-000998
Colon/Colorectal Cancer
CCLE
VVTST
DEG_SPOP_SBC_1
0.0556
p.N1106H
CW-2
large_intestine
COSMIC
VVTST
DEG_SPOP_SBC_1
0.0556
Drug responses associated with KCNH8 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of VVTST
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
P15408
Fos-related antigen 2
DEG_SPOP_SBC_1
266:270
VVTST
SPOP
0.9977
More...
P25940
Collagen alpha-3
DEG_SPOP_SBC_1
306:310
VVTST
SPOP
0.9957
More...
Q685J3
Mucin-17
DEG_SPOP_SBC_1
2546:2550
VVTST
SPOP
0.7708
More...
Q8NFC6
Biorientation of chromosomes in cell division protein 1-like 1
DEG_SPOP_SBC_1
1870:1874
VVTST
SPOP
0.9754
More...
Q8WZ42
Titin
DEG_SPOP_SBC_1
15779:15783
VVTST
SPOP
0.5021
More...
Q96L42
Potassium voltage-gated channel subfamily H member 8
DEG_SPOP_SBC_1
1092:1096
VVTST
SPOP
0.7903
More...
Q9P266
Junctional protein associated with coronary artery disease
DEG_SPOP_SBC_1
1181:1185
VVTST
SPOP
0.6941
More...