DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
AKSTS
Uniprot ID:
A6NKT7
Source protein:
RanBP2-like and GRIP domain-containing protein 3
Source gene:
RGPD3
Class:
DEG_SPOP_SBC_1
Location:
976:980
E3 ligase:
SPOP
DEGRON score:
0.8902
ASA_SCORE:
70.52
COIL:
0.7044
CONS_SCORE:
0.3601
DSS_SCORE:
0.2423
HELIX:
0.2476
FCONS_SCORE:
1.0742
RIG_SCORE:
0.756
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.G987D
TCGA-3N-A9WC
SKCM
TCGA
AKSTS
DEG_SPOP_SBC_1
0.1389
p.G987D
TCGA-IB-7651
PAAD
TCGA
AKSTS
DEG_SPOP_SBC_1
0.1389
p.G987D
DO46657
PAAD
ICGC
AKSTS
DEG_SPOP_SBC_1
0.1389
p.G987D
DO51234
SKCM
ICGC
AKSTS
DEG_SPOP_SBC_1
0.1389
p.S978L
TCGA-BH-A0HF
BRCA
TCGA
AKSTS
DEG_SPOP_SBC_1
0.8778
p.S978L
DO1749
BRCA
ICGC
AKSTS
DEG_SPOP_SBC_1
0.8778
p.T979A
TCGA-BS-A0UJ
UCEC
TCGA
AKSTS
DEG_SPOP_SBC_1
0.825
p.T979A
DO42745
UCEC
ICGC
AKSTS
DEG_SPOP_SBC_1
0.825
p.G983E
TCGA-D3-A3MU
SKCM
TCGA
AKSTS
DEG_SPOP_SBC_1
0.25
p.G983E
TCGA-EB-A41B
SKCM
TCGA
AKSTS
DEG_SPOP_SBC_1
0.25
p.G983E
DO37611
SKCM
ICGC
AKSTS
DEG_SPOP_SBC_1
0.25
p.G983E
DO47337
SKCM
ICGC
AKSTS
DEG_SPOP_SBC_1
0.25
p.K989E
TCGA-EE-A2MJ
SKCM
TCGA
AKSTS
DEG_SPOP_SBC_1
0.1944
p.K989E
DO38099
SKCM
ICGC
AKSTS
DEG_SPOP_SBC_1
0.1944
p.F970L
TCGA-UF-A7JO
HNSC
TCGA
AKSTS
DEG_SPOP_SBC_1
0.1667
p.F970L
DO219088
HNSC
ICGC
AKSTS
DEG_SPOP_SBC_1
0.1667
p.G983R
DO229459
SKCA
ICGC
AKSTS
DEG_SPOP_SBC_1
0.25
p.K988N
DO218912
SKCA
ICGC
AKSTS
DEG_SPOP_SBC_1
0.5556
p.F986Y
SIDM00491
Thyroid Gland Carcinoma
GDSC
AKSTS
DEG_SPOP_SBC_1
0.1667
Drug responses associated with RGPD3 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of AKSTS
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
P49792
E3 SUMO-protein ligase RanBP2
DEG_SPOP_SBC_1
1951:1955
AKSTS
SPOP
0.8024
More...
P58304
Visual system homeobox 2
DEG_SPOP_SBC_1
18:22
AKSTS
SPOP
0.9689
More...
Q13480
GRB2-associated-binding protein 1
DEG_SPOP_SBC_1
204:208
AKSTS
SPOP
0.7361
More...
Q8WWL2
Protein spire homolog 2
DEG_SPOP_SBC_1
383:387
AKSTS
SPOP
0.6134
More...
Q9NSC2
Sal-like protein 1
DEG_SPOP_SBC_1
438:442
AKSTS
SPOP
0.9731
More...
A6NKT7
RanBP2-like and GRIP domain-containing protein 3
DEG_SPOP_SBC_1
976:980
AKSTS
SPOP
0.8902
More...
P0DJD0
RANBP2-like and GRIP domain-containing protein 1
DEG_SPOP_SBC_1
960:964
AKSTS
SPOP
0.9976
More...
P0DJD1
RANBP2-like and GRIP domain-containing protein 2
DEG_SPOP_SBC_1
968:972
AKSTS
SPOP
0.9478
More...
Q569K6
Coiled-coil domain-containing protein 157
DEG_SPOP_SBC_1
643:647
AKSTS
SPOP
0.7532
More...