DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
CPH
CGC
Degron:
PNSST
Uniprot ID:
Q5VT52
Source protein:
Regulation of nuclear pre-mRNA domain-containing protein 2
Source gene:
RPRD2
Class:
DEG_SPOP_SBC_1
Location:
594:598
E3 ligase:
SPOP
DEGRON score:
0.9968
ASA_SCORE:
90.84
COIL:
0.9618
CONS_SCORE:
0.3652
DSS_SCORE:
0.465
HELIX:
0.0202
FCONS_SCORE:
1.0438
RIG_SCORE:
0.5796
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.S599Y
TCGA-06-5416
GBM
TCGA
PNSST
DEG_SPOP_SBC_1
0.3056
p.P587T
TCGA-CA-6717
COAD
TCGA
PNSST
DEG_SPOP_SBC_1
0.1389
p.Y592C
TCGA-CV-A6K1
HNSC
TCGA
PNSST
DEG_SPOP_SBC_1
0.7222
p.P594H
TCGA-EE-A3AA
SKCM
TCGA
PNSST
DEG_SPOP_SBC_1
0.7694
p.K588R
TCGA-N5-A4RD
UCS
TCGA
PNSST
DEG_SPOP_SBC_1
0.2778
p.T595A
DO233663
GACA
ICGC
PNSST
DEG_SPOP_SBC_1
0.7139
p.P594L
SIDM00967
Ovarian Carcinoma
GDSC
PNSST
DEG_SPOP_SBC_1
0.7582
p.P594L
ACH-002181
Ovarian Cancer
CCLE
PNSST
DEG_SPOP_SBC_1
0.7582
p.P594L
OVCA420
ovary
COSMIC
PNSST
DEG_SPOP_SBC_1
0.7582
p.S593N
TOV-21G
ovary
COSMIC
PNSST
DEG_SPOP_SBC_1
0.75
p.S600F
KYSE-270
oesophagus
COSMIC
PNSST
DEG_SPOP_SBC_1
0.2778
p.T606A
CAL-29
urinary_tract
COSMIC
PNSST
DEG_SPOP_SBC_1
0.1111
Drug responses associated with RPRD2 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of PNSST
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
P78536
Disintegrin and metalloproteinase domain-containing protein 17
DEG_SPOP_SBC_1
783:787
PNSST
SPOP
0.9977
More...
Q05397
Focal adhesion kinase 1
DEG_SPOP_SBC_1
14:18
PNSST
SPOP
0.8344
More...
Q5VT52
Regulation of nuclear pre-mRNA domain-containing protein 2
DEG_SPOP_SBC_1
594:598
PNSST
SPOP
0.9968
More...
Q659C4
La-related protein 1B
DEG_SPOP_SBC_1
876:880
PNSST
SPOP
0.9535
More...
Q8NFP9
Neurobeachin
DEG_SPOP_SBC_1
1140:1144
PNSST
SPOP
0.9729
More...
Q8WV28
B-cell linker protein
DEG_SPOP_SBC_1
212:216
PNSST
SPOP
0.9611
More...
Q92547
DNA topoisomerase 2-binding protein 1
DEG_SPOP_SBC_1
294:298
PNSST
SPOP
0.9767
More...
Q9ULT6
E3 ubiquitin-protein ligase ZNRF3
DEG_SPOP_SBC_1
678:682
PNSST
SPOP
0.7312
More...
Q9UPQ9
Trinucleotide repeat-containing gene 6B protein
DEG_SPOP_SBC_1
531:535
PNSST
SPOP
0.9864
More...