DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
PNSST
Uniprot ID:
Q9UPQ9
Source protein:
Trinucleotide repeat-containing gene 6B protein
Source gene:
TNRC6B
Class:
DEG_SPOP_SBC_1
Location:
531:535
E3 ligase:
SPOP
DEGRON score:
0.9864
ASA_SCORE:
88.98
COIL:
0.9218
CONS_SCORE:
0.3899
DSS_SCORE:
0.7454
HELIX:
0.0654
FCONS_SCORE:
1.1622
RIG_SCORE:
0.5674
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.N540K
TCGA-D1-A103
UCEC
TCGA
PNSST
DEG_SPOP_SBC_1
0.1944
p.N540K
DO42312
UCEC
ICGC
PNSST
DEG_SPOP_SBC_1
0.1944
p.Q541E
TCGA-HQ-A5NE
BLCA
TCGA
PNSST
DEG_SPOP_SBC_1
0.1667
p.Q541E
DO51900
BLCA
ICGC
PNSST
DEG_SPOP_SBC_1
0.1667
p.H544R
TCGA-QG-A5Z2
COAD
TCGA
PNSST
DEG_SPOP_SBC_1
0.0833
p.H544R
DO44096
COAD
ICGC
PNSST
DEG_SPOP_SBC_1
0.0833
p.Q530R
DO230309
COCA
ICGC
PNSST
DEG_SPOP_SBC_1
0.3056
p.K542N
DO230326
COCA
ICGC
PNSST
DEG_SPOP_SBC_1
0.25
p.P541L
ACH-002026
Endometrial/Uterine Cancer
CCLE
PNSST
DEG_SPOP_SBC_1
0.1667
Drug responses associated with TNRC6B mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of PNSST
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
P78536
Disintegrin and metalloproteinase domain-containing protein 17
DEG_SPOP_SBC_1
783:787
PNSST
SPOP
0.9977
More...
Q05397
Focal adhesion kinase 1
DEG_SPOP_SBC_1
14:18
PNSST
SPOP
0.8344
More...
Q5VT52
Regulation of nuclear pre-mRNA domain-containing protein 2
DEG_SPOP_SBC_1
594:598
PNSST
SPOP
0.9968
More...
Q659C4
La-related protein 1B
DEG_SPOP_SBC_1
876:880
PNSST
SPOP
0.9535
More...
Q8NFP9
Neurobeachin
DEG_SPOP_SBC_1
1140:1144
PNSST
SPOP
0.9729
More...
Q8WV28
B-cell linker protein
DEG_SPOP_SBC_1
212:216
PNSST
SPOP
0.9611
More...
Q92547
DNA topoisomerase 2-binding protein 1
DEG_SPOP_SBC_1
294:298
PNSST
SPOP
0.9767
More...
Q9ULT6
E3 ubiquitin-protein ligase ZNRF3
DEG_SPOP_SBC_1
678:682
PNSST
SPOP
0.7312
More...
Q9UPQ9
Trinucleotide repeat-containing gene 6B protein
DEG_SPOP_SBC_1
531:535
PNSST
SPOP
0.9864
More...