DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
PNSST
Uniprot ID:
Q8NFP9
Source protein:
Neurobeachin
Source gene:
NBEA
Class:
DEG_SPOP_SBC_1
Location:
1140:1144
E3 ligase:
SPOP
DEGRON score:
0.9729
ASA_SCORE:
77.5
COIL:
0.8572
CONS_SCORE:
0.2984
DSS_SCORE:
0.4561
HELIX:
0.1144
FCONS_SCORE:
1.0103
RIG_SCORE:
0.6732
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.T1131K
TCGA-AF-A56L
READ
TCGA
PNSST
DEG_SPOP_SBC_1
0.0833
p.T1131K
DO50276
READ
ICGC
PNSST
DEG_SPOP_SBC_1
0.0833
p.E1137D
TCGA-AY-4070
COAD
TCGA
PNSST
DEG_SPOP_SBC_1
0.25
p.E1137D
DO10518
COAD
ICGC
PNSST
DEG_SPOP_SBC_1
0.25
p.A1133E
TCGA-CM-6676
COAD
TCGA
PNSST
DEG_SPOP_SBC_1
0.1389
p.A1133E
DO9546
COAD
ICGC
PNSST
DEG_SPOP_SBC_1
0.1389
p.N1141S
TCGA-D3-A2JF
SKCM
TCGA
PNSST
DEG_SPOP_SBC_1
0.5958
p.N1141S
DO38153
SKCM
ICGC
PNSST
DEG_SPOP_SBC_1
0.5958
p.S1143G
TCGA-EO-A22R
UCEC
TCGA
PNSST
DEG_SPOP_SBC_1
0.6993
p.S1143G
DO42713
UCEC
ICGC
PNSST
DEG_SPOP_SBC_1
0.6993
p.D1138Y
TCGA-F5-6814
READ
TCGA
PNSST
DEG_SPOP_SBC_1
0.2778
p.D1138Y
DO36556
READ
ICGC
PNSST
DEG_SPOP_SBC_1
0.2778
p.D1149H
TCGA-G5-6233
READ
TCGA
PNSST
DEG_SPOP_SBC_1
0.1944
p.D1149H
DO36626
READ
ICGC
PNSST
DEG_SPOP_SBC_1
0.1944
p.A1133V
DO227786
COCA
ICGC
PNSST
DEG_SPOP_SBC_1
0.1389
p.E1135K
DO220877
MELA
ICGC
PNSST
DEG_SPOP_SBC_1
0.1944
p.N1141I
SIDM00545
Melanoma
GDSC
PNSST
DEG_SPOP_SBC_1
0.6169
p.N1141I
ACH-000987
Skin Cancer
CCLE
PNSST
DEG_SPOP_SBC_1
0.6169
p.N1141I
Mewo
skin
COSMIC
PNSST
DEG_SPOP_SBC_1
0.6169
p.L1147I
SIDM00118
Colorectal Carcinoma
GDSC
PNSST
DEG_SPOP_SBC_1
0.25
p.L1147I
SIDM01611
Endometrial Carcinoma
GDSC
PNSST
DEG_SPOP_SBC_1
0.25
p.L1147I
ACH-000996
Endometrial/Uterine Cancer
CCLE
PNSST
DEG_SPOP_SBC_1
0.25
p.L1147I
ACH-001081
Colon/Colorectal Cancer
CCLE
PNSST
DEG_SPOP_SBC_1
0.25
p.L1147I
HCC2998
large_intestine
COSMIC
PNSST
DEG_SPOP_SBC_1
0.25
Drug responses associated with NBEA mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of PNSST
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
P78536
Disintegrin and metalloproteinase domain-containing protein 17
DEG_SPOP_SBC_1
783:787
PNSST
SPOP
0.9977
More...
Q05397
Focal adhesion kinase 1
DEG_SPOP_SBC_1
14:18
PNSST
SPOP
0.8344
More...
Q5VT52
Regulation of nuclear pre-mRNA domain-containing protein 2
DEG_SPOP_SBC_1
594:598
PNSST
SPOP
0.9968
More...
Q659C4
La-related protein 1B
DEG_SPOP_SBC_1
876:880
PNSST
SPOP
0.9535
More...
Q8NFP9
Neurobeachin
DEG_SPOP_SBC_1
1140:1144
PNSST
SPOP
0.9729
More...
Q8WV28
B-cell linker protein
DEG_SPOP_SBC_1
212:216
PNSST
SPOP
0.9611
More...
Q92547
DNA topoisomerase 2-binding protein 1
DEG_SPOP_SBC_1
294:298
PNSST
SPOP
0.9767
More...
Q9ULT6
E3 ubiquitin-protein ligase ZNRF3
DEG_SPOP_SBC_1
678:682
PNSST
SPOP
0.7312
More...
Q9UPQ9
Trinucleotide repeat-containing gene 6B protein
DEG_SPOP_SBC_1
531:535
PNSST
SPOP
0.9864
More...