DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
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CGC
Degron:
VDTSS
Uniprot ID:
P06454
Source protein:
Prothymosin alpha [Cleaved into: Prothymosin alpha, N-terminally processed; Thymosin alpha-1]
Source gene:
PTMA
Class:
DEG_SPOP_SBC_1
Location:
6:10
E3 ligase:
SPOP
DEGRON score:
0.9544
ASA_SCORE:
65.56
COIL:
0.7784
CONS_SCORE:
0.8835
DSS_SCORE:
0.7033
HELIX:
0.0952
FCONS_SCORE:
0.9695
RIG_SCORE:
0.7083
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.S9G
TCGA-D1-A1NZ
UCEC
TCGA
VDTSS
DEG_SPOP_SBC_1
0.8104
p.V16I
DO8938
COAD
ICGC
VDTSS
DEG_SPOP_SBC_1
0.1667
p.W16L
DO228974
LICA
ICGC
VDTSS
DEG_SPOP_SBC_1
0.1667
p.V12L
DO229015
LICA
ICGC
VDTSS
DEG_SPOP_SBC_1
0.2778
p.R14L
DO229045
LICA
ICGC
VDTSS
DEG_SPOP_SBC_1
0.2222
p.G5W
DO229009
LICA
ICGC
VDTSS
DEG_SPOP_SBC_1
0.75
p.A11T
DO42608
UCEC
ICGC
VDTSS
DEG_SPOP_SBC_1
0.3056
Drug responses associated with PTMA mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of VDTSS
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O95359
Transforming acidic coiled-coil-containing protein 2
DEG_SPOP_SBC_1
1392:1396
VDTSS
SPOP
0.9909
More...
P06454
Prothymosin alpha [Cleaved into: Prothymosin alpha, N-terminally processed; Thymosin alpha-1]
DEG_SPOP_SBC_1
6:10
VDTSS
SPOP
0.9544
More...
P12270
Nucleoprotein TPR
DEG_SPOP_SBC_1
2313:2317
VDTSS
SPOP
0.5257
More...
P16435
NADPH--cytochrome P450 reductase
DEG_SPOP_SBC_1
6:10
VDTSS
SPOP
0.7465
More...
Q96T58
Msx2-interacting protein
DEG_SPOP_SBC_1
2527:2531
VDTSS
SPOP
0.9726
More...
Q9C0D2
Centrosomal protein of 295 kDa
DEG_SPOP_SBC_1
1392:1396
VDTSS
SPOP
0.9888
More...
Q9H799
Ciliogenesis and planar polarity effector 1
DEG_SPOP_SBC_1
1985:1989
VDTSS
SPOP
0.9585
More...
Q9ULD8
Potassium voltage-gated channel subfamily H member 3
DEG_SPOP_SBC_1
713:717
VDTSS
SPOP
0.8379
More...