DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
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CGC
Degron:
VDTSS
Uniprot ID:
Q96T58
Source protein:
Msx2-interacting protein
Source gene:
SPEN
Class:
DEG_SPOP_SBC_1
Location:
2527:2531
E3 ligase:
SPOP
DEGRON score:
0.9726
ASA_SCORE:
84.8
COIL:
0.9046
CONS_SCORE:
0.501
DSS_SCORE:
0.5396
HELIX:
0.061
FCONS_SCORE:
1.0491
RIG_SCORE:
0.6857
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.D2526A
TCGA-CZ-4859
KIRC
TCGA
VDTSS
DEG_SPOP_SBC_1
0.3056
p.D2526A
DO18602
KIRC
ICGC
VDTSS
DEG_SPOP_SBC_1
0.3056
p.P2541L
TCGA-DA-A1I0
SKCM
TCGA
VDTSS
DEG_SPOP_SBC_1
0.0556
p.P2541L
DO37719
SKCM
ICGC
VDTSS
DEG_SPOP_SBC_1
0.0556
p.P2541H
TCGA-DU-6392
LGG
TCGA
VDTSS
DEG_SPOP_SBC_1
0.0556
p.P2541H
DO22237
LGG
ICGC
VDTSS
DEG_SPOP_SBC_1
0.0556
p.D2521N
TCGA-G2-A3VY
BLCA
TCGA
VDTSS
DEG_SPOP_SBC_1
0.1667
p.D2521N
DO590
BLCA
ICGC
VDTSS
DEG_SPOP_SBC_1
0.1667
p.D2521H
TCGA-IR-A3LK
CESC
TCGA
VDTSS
DEG_SPOP_SBC_1
0.1667
p.D2521H
DO44299
CESC
ICGC
VDTSS
DEG_SPOP_SBC_1
0.1667
p.P2519L
TCGA-QQ-A8VG
SARC
TCGA
VDTSS
DEG_SPOP_SBC_1
0.1111
p.P2519L
DO220260
SARC
ICGC
VDTSS
DEG_SPOP_SBC_1
0.1111
p.S2530G
SIDM00693
Bladder Carcinoma
GDSC
VDTSS
DEG_SPOP_SBC_1
0.8104
p.S2530G
SIDM01732
Non-Cancerous
GDSC
VDTSS
DEG_SPOP_SBC_1
0.8104
p.S2530G
ACH-000396
Bladder Cancer
CCLE
VDTSS
DEG_SPOP_SBC_1
0.8104
p.S2530G
ACH-001385
Head and Neck Cancer
CCLE
VDTSS
DEG_SPOP_SBC_1
0.8104
p.S2530G
ACH-002379
Non-Cancerous
CCLE
VDTSS
DEG_SPOP_SBC_1
0.8104
p.S2530G
RPMI-2650
upper_aerodigestive_tract
COSMIC
VDTSS
DEG_SPOP_SBC_1
0.8104
p.S2532N
SIDM01545
Non-Small Cell Lung Carcinoma
GDSC
VDTSS
DEG_SPOP_SBC_1
0.3056
p.S2532N
ACH-000511
Lung Cancer
CCLE
VDTSS
DEG_SPOP_SBC_1
0.3056
Drug responses associated with SPEN mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of VDTSS
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O95359
Transforming acidic coiled-coil-containing protein 2
DEG_SPOP_SBC_1
1392:1396
VDTSS
SPOP
0.9909
More...
P06454
Prothymosin alpha [Cleaved into: Prothymosin alpha, N-terminally processed; Thymosin alpha-1]
DEG_SPOP_SBC_1
6:10
VDTSS
SPOP
0.9544
More...
P12270
Nucleoprotein TPR
DEG_SPOP_SBC_1
2313:2317
VDTSS
SPOP
0.5257
More...
P16435
NADPH--cytochrome P450 reductase
DEG_SPOP_SBC_1
6:10
VDTSS
SPOP
0.7465
More...
Q96T58
Msx2-interacting protein
DEG_SPOP_SBC_1
2527:2531
VDTSS
SPOP
0.9726
More...
Q9C0D2
Centrosomal protein of 295 kDa
DEG_SPOP_SBC_1
1392:1396
VDTSS
SPOP
0.9888
More...
Q9H799
Ciliogenesis and planar polarity effector 1
DEG_SPOP_SBC_1
1985:1989
VDTSS
SPOP
0.9585
More...
Q9ULD8
Potassium voltage-gated channel subfamily H member 3
DEG_SPOP_SBC_1
713:717
VDTSS
SPOP
0.8379
More...