DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
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CGC
Degron:
VDTSS
Uniprot ID:
P12270
Source protein:
Nucleoprotein TPR
Source gene:
TPR
Class:
DEG_SPOP_SBC_1
Location:
2313:2317
E3 ligase:
SPOP
DEGRON score:
0.5257
ASA_SCORE:
91.36
COIL:
0.9184
CONS_SCORE:
0.5137
DSS_SCORE:
0.8249
HELIX:
0.0412
FCONS_SCORE:
1.0106
RIG_SCORE:
0.5433
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.S2316G
TCGA-49-AAR4
LUAD
TCGA
VDTSS
DEG_SPOP_SBC_1
0.6993
p.S2316G
DO218920
LUAD
ICGC
VDTSS
DEG_SPOP_SBC_1
0.6993
p.P2320S
TCGA-49-AAR9
LUAD
TCGA
VDTSS
DEG_SPOP_SBC_1
0.25
p.P2320S
DO218921
LUAD
ICGC
VDTSS
DEG_SPOP_SBC_1
0.25
p.Q2319H
TCGA-49-AAR9
LUAD
TCGA
VDTSS
DEG_SPOP_SBC_1
0.2778
p.Q2319H
DO218921
LUAD
ICGC
VDTSS
DEG_SPOP_SBC_1
0.2778
p.S2316T
TCGA-CM-5861
COAD
TCGA
VDTSS
DEG_SPOP_SBC_1
0.6005
p.S2316T
DO7918
COAD
ICGC
VDTSS
DEG_SPOP_SBC_1
0.6005
p.S2312Y
DO229024
LICA
ICGC
VDTSS
DEG_SPOP_SBC_1
0.3056
p.T2315A
SIDM00447
B-Lymphoblastic Leukemia
GDSC
VDTSS
DEG_SPOP_SBC_1
0.7139
p.T2315A
ACH-000960
Leukemia
CCLE
VDTSS
DEG_SPOP_SBC_1
0.7139
p.T2315A
ACH-000982
Colon/Colorectal Cancer
CCLE
VDTSS
DEG_SPOP_SBC_1
0.7139
p.T2315A
REH
haematopoietic_and_lymphoid_tissue
COSMIC
VDTSS
DEG_SPOP_SBC_1
0.7139
Drug responses associated with TPR mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of VDTSS
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O95359
Transforming acidic coiled-coil-containing protein 2
DEG_SPOP_SBC_1
1392:1396
VDTSS
SPOP
0.9909
More...
P06454
Prothymosin alpha [Cleaved into: Prothymosin alpha, N-terminally processed; Thymosin alpha-1]
DEG_SPOP_SBC_1
6:10
VDTSS
SPOP
0.9544
More...
P12270
Nucleoprotein TPR
DEG_SPOP_SBC_1
2313:2317
VDTSS
SPOP
0.5257
More...
P16435
NADPH--cytochrome P450 reductase
DEG_SPOP_SBC_1
6:10
VDTSS
SPOP
0.7465
More...
Q96T58
Msx2-interacting protein
DEG_SPOP_SBC_1
2527:2531
VDTSS
SPOP
0.9726
More...
Q9C0D2
Centrosomal protein of 295 kDa
DEG_SPOP_SBC_1
1392:1396
VDTSS
SPOP
0.9888
More...
Q9H799
Ciliogenesis and planar polarity effector 1
DEG_SPOP_SBC_1
1985:1989
VDTSS
SPOP
0.9585
More...
Q9ULD8
Potassium voltage-gated channel subfamily H member 3
DEG_SPOP_SBC_1
713:717
VDTSS
SPOP
0.8379
More...