DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
VVTSS
Uniprot ID:
P13647
Source protein:
Keratin, type II cytoskeletal 5
Source gene:
KRT5
Class:
DEG_SPOP_SBC_1
Location:
493:497
E3 ligase:
SPOP
DEGRON score:
0.7679
ASA_SCORE:
63.08
COIL:
0.4872
CONS_SCORE:
0.3573
DSS_SCORE:
0.3279
HELIX:
0.0086
FCONS_SCORE:
0.9899
RIG_SCORE:
0.8084
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.G501V
TCGA-05-4390
LUAD
TCGA
VVTSS
DEG_SPOP_SBC_1
0.2222
p.G501V
DO23562
LUAD
ICGC
VVTSS
DEG_SPOP_SBC_1
0.2222
p.V493A
TCGA-AX-A2IN
UCEC
TCGA
VVTSS
DEG_SPOP_SBC_1
0.5825
p.V493A
DO42328
UCEC
ICGC
VVTSS
DEG_SPOP_SBC_1
0.5825
p.V494D
TCGA-CV-7432
HNSC
TCGA
VVTSS
DEG_SPOP_SBC_1
0.6674
p.V494D
DO14159
HNSC
ICGC
VVTSS
DEG_SPOP_SBC_1
0.6674
p.P488R
DO231976
LICA
ICGC
VVTSS
DEG_SPOP_SBC_1
0.1944
p.Y502C
SIDM00535
Chondrosarcoma
GDSC
VVTSS
DEG_SPOP_SBC_1
0.1944
p.Y502C
ACH-001519
Bone Cancer
CCLE
VVTSS
DEG_SPOP_SBC_1
0.1944
Drug responses associated with KRT5 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of VVTSS
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
P13647
Keratin, type II cytoskeletal 5
DEG_SPOP_SBC_1
493:497
VVTSS
SPOP
0.7679
More...
P48431
Transcription factor SOX-2
DEG_SPOP_SBC_1
254:258
VVTSS
SPOP
0.9969
More...
Q8WXI7
Mucin-16
DEG_SPOP_SBC_1
8969:8973
VVTSS
SPOP
0.91
More...
Q8WXI7
Mucin-16
DEG_SPOP_SBC_1
9549:9553
VVTSS
SPOP
0.9841
More...
Q8WZ42
Titin
DEG_SPOP_SBC_1
19866:19870
VVTSS
SPOP
0.9845
More...
Q99519
Sialidase-1
DEG_SPOP_SBC_1
323:327
VVTSS
SPOP
0.5495
More...
E9PAV3
Nascent polypeptide-associated complex subunit alpha, muscle-specific form
DEG_SPOP_SBC_1
285:289
VVTSS
SPOP
0.9842
More...
Q5TGY3
AT-hook DNA-binding motif-containing protein 1
DEG_SPOP_SBC_1
9:13
VVTSS
SPOP
0.6915
More...