DegronMD: protein-targeted degradation, mutation and drug response to degrons
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CGC
Degron:
VVTTS
Uniprot ID:
P48549
Source protein:
G protein-activated inward rectifier potassium channel 1
Source gene:
KCNJ3
Class:
DEG_SPOP_SBC_1
Location:
14:18
E3 ligase:
SPOP
DEGRON score:
0.9146
ASA_SCORE:
85.44
COIL:
0.7844
CONS_SCORE:
0.2453
DSS_SCORE:
0.5991
HELIX:
0.0384
FCONS_SCORE:
0.8712
RIG_SCORE:
0.7064
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.D10E
TCGA-77-A5G3
LUSC
TCGA
VVTTS
DEG_SPOP_SBC_1
0.2222
p.D10E
DO45456
LUSC
ICGC
VVTTS
DEG_SPOP_SBC_1
0.2222
p.V14L
TCGA-85-8049
LUSC
TCGA
VVTTS
DEG_SPOP_SBC_1
0.6765
p.V14L
DO26890
LUSC
ICGC
VVTTS
DEG_SPOP_SBC_1
0.6765
p.G28W
TCGA-85-8288
LUSC
TCGA
VVTTS
DEG_SPOP_SBC_1
0.0556
p.G28W
DO26963
LUSC
ICGC
VVTTS
DEG_SPOP_SBC_1
0.0556
p.T17I
TCGA-AY-A54L
COAD
TCGA
VVTTS
DEG_SPOP_SBC_1
0.7078
p.T17I
DO44091
COAD
ICGC
VVTTS
DEG_SPOP_SBC_1
0.7078
p.D11N
TCGA-EE-A3J5
SKCM
TCGA
VVTTS
DEG_SPOP_SBC_1
0.25
p.D11N
DO47331
SKCM
ICGC
VVTTS
DEG_SPOP_SBC_1
0.25
p.R5Q
TCGA-EO-A22U
UCEC
TCGA
VVTTS
DEG_SPOP_SBC_1
0.0833
p.R5Q
TCGA-EO-A3B0
UCEC
TCGA
VVTTS
DEG_SPOP_SBC_1
0.0833
p.R5Q
DO219773
UCEC
ICGC
VVTTS
DEG_SPOP_SBC_1
0.0833
p.R5Q
DO43755
UCEC
ICGC
VVTTS
DEG_SPOP_SBC_1
0.0833
p.Q13H
TCGA-L4-A4E5
LUAD
TCGA
VVTTS
DEG_SPOP_SBC_1
0.3056
p.Q13H
DO24320
LUAD
ICGC
VVTTS
DEG_SPOP_SBC_1
0.3056
p.G23V
DO229027
LICA
ICGC
VVTTS
DEG_SPOP_SBC_1
0.1944
p.G28R
DO220913
MELA
ICGC
VVTTS
DEG_SPOP_SBC_1
0.0556
p.T16A
SIDM00373
Endometrial Carcinoma
GDSC
VVTTS
DEG_SPOP_SBC_1
0.7139
p.G23R
SIDM00700
Non-Small Cell Lung Carcinoma
GDSC
VVTTS
DEG_SPOP_SBC_1
0.1944
p.G23R
ACH-001363
Lung Cancer
CCLE
VVTTS
DEG_SPOP_SBC_1
0.1944
p.G23R
NCI-H2135
lung
COSMIC
VVTTS
DEG_SPOP_SBC_1
0.1944
p.Q27K
SIDM01047
Chronic Myelogenous Leukemia
GDSC
VVTTS
DEG_SPOP_SBC_1
0.0833
p.Q27K
ACH-000295
Leukemia
CCLE
VVTTS
DEG_SPOP_SBC_1
0.0833
p.Q27K
EM-2
haematopoietic_and_lymphoid_tissue
COSMIC
VVTTS
DEG_SPOP_SBC_1
0.0833
p.G21V
SIDM00247
Gastric Carcinoma
GDSC
VVTTS
DEG_SPOP_SBC_1
0.25
p.G21V
ACH-000356
Gastric Cancer
CCLE
VVTTS
DEG_SPOP_SBC_1
0.25
p.G21V
MKN45
stomach
COSMIC
VVTTS
DEG_SPOP_SBC_1
0.25
Drug responses associated with KCNJ3 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of VVTTS
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
P48549
G protein-activated inward rectifier potassium channel 1
DEG_SPOP_SBC_1
14:18
VVTTS
SPOP
0.9146
More...
P85037
Forkhead box protein K1
DEG_SPOP_SBC_1
527:531
VVTTS
SPOP
0.6903
More...
Q13585
Melatonin-related receptor
DEG_SPOP_SBC_1
592:596
VVTTS
SPOP
0.6486
More...
Q5VUA4
Zinc finger protein 318
DEG_SPOP_SBC_1
1339:1343
VVTTS
SPOP
0.5532
More...
Q7L190
Developmental pluripotency-associated protein 4
DEG_SPOP_SBC_1
193:197
VVTTS
SPOP
0.7183
More...
Q8IUR5
Protein O-mannosyl-transferase TMTC1
DEG_SPOP_SBC_1
2:6
VVTTS
SPOP
0.853
More...
Q8WXI7
Mucin-16
DEG_SPOP_SBC_1
3981:3985
VVTTS
SPOP
0.9671
More...
Q9NWB7
Intraflagellar transport protein 57 homolog
DEG_SPOP_SBC_1
7:11
VVTTS
SPOP
0.7919
More...