| Gene symbol | Gene name | Chr. | Entrez ID | UniProt ID | Cleft type | Species | Evidence | Details |
|---|---|---|---|---|---|---|---|---|
| Fzd7 | Frizzled-7 | 1 | 14369 | Q61090 | CPO | Mus musculus | More>> | |
| Gbx2 | Homeobox protein GBX-2 | 1 | 14472 | P48031 | CPO | Mus musculus | More>> | |
| Hhat | Protein-cysteine N-palmitoyltransferase HHAT | 1 | 226861 | Q8BMT9 | CLP | Mus musculus | More>> | |
| Hsd17b7 | 3-keto-steroid reductase | 1 | 15490 | O88736 | CPO | Mus musculus | More>> | |
| Ihh | Indian hedgehog protein | 1 | 16147 | P97812 | CLP | Mus musculus | More>> | |
| Inhbb | Inhibin beta B chain | 1 | 16324 | Q04999 | CPO | Mus musculus | More>> | |
| Insig2 | Insulin-induced gene 2 protein | 1 | 72999 | Q91WG1 | CPO | Mus musculus | More>> | |
| Kcnj13 | Inward rectifier potassium channel 13 | 1 | 100040591 | P86046 | CPO | Mus musculus | More>> | |
| Lbr | Delta(14)-sterol reductase LBR | 1 | 98386 | Q3U9G9 | CPO | Mus musculus | More>> | |
| Msc | Musculin | 1 | 17681 | O88940 | CPO | Mus musculus | More>> | |
| Mstn | Growth/differentiation factor 8 | 1 | 17700 | O08689 | CPO | Mus musculus | More>> | |
| Nuak2 | NUAK family SNF1-like kinase 2 | 1 | 74137 | Q8BZN4 | CPO | Mus musculus | More>> | |
| Pbx1 | Pre-B-cell leukemia transcription factor 1 | 1 | 18514 | P41778 | CPO,CLP,CLO | Mus musculus | More>> | |
| Prrx1 | Paired mesoderm homeobox protein 1 | 1 | 18933 | P63013 | CPO | Mus musculus | More>> | |
| Qsox1 | Sulfhydryl oxidase 1 | 1 | 104009 | Q8BND5 | CPO | Mus musculus | More>> | |
| Rdh10 | Retinol dehydrogenase 10 | 1 | 98711 | Q8VCH7 | CPO | Mus musculus | More>> | |
| Sdccag8 | Serologically defined colon cancer antigen 8 homolog | 1 | 76816 | Q80UF4 | CPO | Mus musculus | More>> | |
| Sumo1 | Small ubiquitin-related modifier 1 | 1 | 22218 | P63166 | CPO | Mus musculus | More>> | |
| Eya1 | Eyes absent homolog 1 | 1 | 14048 | P97767 | CPO | Mus musculus | More>> | |
| Gli2 | Zinc finger protein GLI2 | 1 | 14633 | Q0VGT2 | CPO | Mus musculus | More>> | |
| Irf6 | Interferon regulatory factor 6 | 1 | 54139 | P97431 | CPO | Mus musculus | More>> | |
| Satb2 | DNA-binding protein SATB2 | 1 | 212712 | Q8VI24 | CPO | Mus musculus | More>> | |
| Tgfb2 | Transforming growth factor beta-2 proprotein | 1 | 21808 | P27090 | CPO | Mus musculus | More>> | |
| Disp1 | Protein dispatched homolog 1 | 1 | 68897 | Q3TDN0 | CPO | Mus musculus | More>> | |
| Lgr6 | Leucine-rich repeat-containing G-protein coupled receptor 6 | 1 | 329252 | Q3UVD5 | CPO | Mus musculus | More>> | |
| Mdm4 | Protein Mdm4 | 1 | 17248 | O35618 | CPO | Mus musculus | More>> | |
| Pax3 | Paired box protein Pax-3 | 1 | 18505 | P24610 | CPO | Mus musculus | More>> | |
| Tfap2b | Transcription factor AP-2-beta | 1 | 21419 | Q61313 | CPO | Mus musculus | More>> | |
| Vangl2 | Vang-like protein 2 | 1 | 93840 | Q91ZD4 | CPO | Mus musculus | More>> |
Abbreviation :
Chr. Chromosome. CLO : cleft lip only. CPO : cleft palate only.
CLP : cleft lip and palate. CL/P : cleft lip with/without cleft palate.