DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
CPH
CGC
Degron:
PCTST
Uniprot ID:
O14917
Source protein:
Protocadherin-17
Source gene:
PCDH17
Class:
DEG_SPOP_SBC_1
Location:
1046:1050
E3 ligase:
SPOP
DEGRON score:
0.9985
ASA_SCORE:
66.3
COIL:
0.8502
CONS_SCORE:
0.5069
DSS_SCORE:
0.3334
HELIX:
0.0504
FCONS_SCORE:
1.0442
RIG_SCORE:
0.7148
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.S1053F
TCGA-17-Z042
LUAD
TCGA
PCTST
DEG_SPOP_SBC_1
0.25
p.A1042E
TCGA-73-4666
LUAD
TCGA
PCTST
DEG_SPOP_SBC_1
0.2222
p.A1042E
DO26230
LUAD
ICGC
PCTST
DEG_SPOP_SBC_1
0.2222
p.C1043Y
TCGA-AP-A0LM
UCEC
TCGA
PCTST
DEG_SPOP_SBC_1
0.25
p.C1043Y
DO43306
UCEC
ICGC
PCTST
DEG_SPOP_SBC_1
0.25
p.S1037R
TCGA-CG-4436
STAD
TCGA
PCTST
DEG_SPOP_SBC_1
0.5278
p.S1037R
DO38320
STAD
ICGC
PCTST
DEG_SPOP_SBC_1
0.5278
p.S1037C
TCGA-CK-4952
COAD
TCGA
PCTST
DEG_SPOP_SBC_1
0.5278
p.S1037C
DO10357
COAD
ICGC
PCTST
DEG_SPOP_SBC_1
0.5278
p.K1051N
TCGA-CV-A45Z
HNSC
TCGA
PCTST
DEG_SPOP_SBC_1
0.3056
p.K1051N
DO52064
HNSC
ICGC
PCTST
DEG_SPOP_SBC_1
0.3056
p.K1060N
TCGA-D5-6928
COAD
TCGA
PCTST
DEG_SPOP_SBC_1
0.1667
p.K1060N
DO7776
COAD
ICGC
PCTST
DEG_SPOP_SBC_1
0.1667
p.K1060N
DO50438
ESAD
ICGC
PCTST
DEG_SPOP_SBC_1
0.1667
p.T1040P
TCGA-DM-A28F
COAD
TCGA
PCTST
DEG_SPOP_SBC_1
0.6111
p.T1040P
DO9828
COAD
ICGC
PCTST
DEG_SPOP_SBC_1
0.6111
p.T1040P
DO233703
GACA
ICGC
PCTST
DEG_SPOP_SBC_1
0.6111
p.E1045K
TCGA-EO-A22U
UCEC
TCGA
PCTST
DEG_SPOP_SBC_1
0.3056
p.E1045K
DO43755
UCEC
ICGC
PCTST
DEG_SPOP_SBC_1
0.3056
p.A1042V
TCGA-FI-A2D5
UCEC
TCGA
PCTST
DEG_SPOP_SBC_1
0.2222
p.A1042V
DO234161
ESAD
ICGC
PCTST
DEG_SPOP_SBC_1
0.2222
p.A1042V
DO41331
UCEC
ICGC
PCTST
DEG_SPOP_SBC_1
0.2222
p.E1058K
TCGA-GN-A266
SKCM
TCGA
PCTST
DEG_SPOP_SBC_1
0.1111
p.E1058K
DO37432
SKCM
ICGC
PCTST
DEG_SPOP_SBC_1
0.1111
p.E1058K
ACH-002669
Colon/Colorectal Cancer
CCLE
PCTST
DEG_SPOP_SBC_1
0.1111
p.K1060T
TCGA-HU-8604
STAD
TCGA
PCTST
DEG_SPOP_SBC_1
0.1667
p.K1060T
DO47907
STAD
ICGC
PCTST
DEG_SPOP_SBC_1
0.1667
p.P1039T
TCGA-JY-A6FD
ESCA
TCGA
PCTST
DEG_SPOP_SBC_1
0.1389
p.K1041N
TCGA-NJ-A4YF
LUAD
TCGA
PCTST
DEG_SPOP_SBC_1
0.3056
p.K1041N
DO218940
LUAD
ICGC
PCTST
DEG_SPOP_SBC_1
0.3056
p.T1040A
DO233114
GACA
ICGC
PCTST
DEG_SPOP_SBC_1
0.6111
p.G1056V
DO229041
LICA
ICGC
PCTST
DEG_SPOP_SBC_1
0.1667
p.T1048I
DO220877
MELA
ICGC
PCTST
DEG_SPOP_SBC_1
0.7078
p.T1048I
DO219878
SKCA
ICGC
PCTST
DEG_SPOP_SBC_1
0.7078
p.T1048A
SIDM00845
Burkitt's Lymphoma
GDSC
PCTST
DEG_SPOP_SBC_1
0.7139
p.T1048A
Daudi
haematopoietic_and_lymphoid_tissue
COSMIC
PCTST
DEG_SPOP_SBC_1
0.7139
p.P1039L
ACH-001567
Skin Cancer
CCLE
PCTST
DEG_SPOP_SBC_1
0.1389
Drug responses associated with PCDH17 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of PCTST
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O14917
Protocadherin-17
DEG_SPOP_SBC_1
1046:1050
PCTST
SPOP
0.9985
More...
Q01851
POU domain, class 4, transcription factor 1
DEG_SPOP_SBC_1
89:93
PCTST
SPOP
0.8746
More...
Q12816
Trophinin
DEG_SPOP_SBC_1
923:927
PCTST
SPOP
0.7275
More...
Q15319
POU domain, class 4, transcription factor 3
DEG_SPOP_SBC_1
87:91
PCTST
SPOP
0.9732
More...
Q6ZN17
Protein lin-28 homolog B
DEG_SPOP_SBC_1
186:190
PCTST
SPOP
0.9507
More...
Q8IUM7
Neuronal PAS domain-containing protein 4
DEG_SPOP_SBC_1
503:507
PCTST
SPOP
0.8959
More...
Q8WW38
Zinc finger protein ZFPM2
DEG_SPOP_SBC_1
769:773
PCTST
SPOP
0.5014
More...
Q9Y2X3
Nucleolar protein 58
DEG_SPOP_SBC_1
506:510
PCTST
SPOP
0.9963
More...