DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
CPH
CGC
Degron:
PCTST
Uniprot ID:
Q9Y2X3
Source protein:
Nucleolar protein 58
Source gene:
NOP58
Class:
DEG_SPOP_SBC_1
Location:
506:510
E3 ligase:
SPOP
DEGRON score:
0.9963
ASA_SCORE:
79.96
COIL:
0.8758
CONS_SCORE:
0.3359
DSS_SCORE:
0.5849
HELIX:
0.077
FCONS_SCORE:
0.8528
RIG_SCORE:
0.6782
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.K519M
TCGA-04-1353
OV
TCGA
PCTST
DEG_SPOP_SBC_1
0.1944
p.K519M
DO224034
OV
ICGC
PCTST
DEG_SPOP_SBC_1
0.1944
p.T508A
TCGA-A5-A0GP
UCEC
TCGA
PCTST
DEG_SPOP_SBC_1
0.825
p.T508A
DO41109
UCEC
ICGC
PCTST
DEG_SPOP_SBC_1
0.825
p.A511T
TCGA-CM-5861
COAD
TCGA
PCTST
DEG_SPOP_SBC_1
0.3056
p.A511T
TCGA-SL-A6JA
UCEC
TCGA
PCTST
DEG_SPOP_SBC_1
0.3056
p.A511T
DO7918
COAD
ICGC
PCTST
DEG_SPOP_SBC_1
0.3056
p.A511T
DO219787
UCEC
ICGC
PCTST
DEG_SPOP_SBC_1
0.3056
p.K520R
TCGA-DQ-5630
HNSC
TCGA
PCTST
DEG_SPOP_SBC_1
0.1667
p.K520R
DO14486
HNSC
ICGC
PCTST
DEG_SPOP_SBC_1
0.1667
p.S509I
DO229027
LICA
ICGC
PCTST
DEG_SPOP_SBC_1
0.8453
p.P506S
DO231026
LUSC
ICGC
PCTST
DEG_SPOP_SBC_1
0.6752
p.A511E
DO229234
THCA
ICGC
PCTST
DEG_SPOP_SBC_1
0.3056
Drug responses associated with NOP58 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of PCTST
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O14917
Protocadherin-17
DEG_SPOP_SBC_1
1046:1050
PCTST
SPOP
0.9985
More...
Q01851
POU domain, class 4, transcription factor 1
DEG_SPOP_SBC_1
89:93
PCTST
SPOP
0.8746
More...
Q12816
Trophinin
DEG_SPOP_SBC_1
923:927
PCTST
SPOP
0.7275
More...
Q15319
POU domain, class 4, transcription factor 3
DEG_SPOP_SBC_1
87:91
PCTST
SPOP
0.9732
More...
Q6ZN17
Protein lin-28 homolog B
DEG_SPOP_SBC_1
186:190
PCTST
SPOP
0.9507
More...
Q8IUM7
Neuronal PAS domain-containing protein 4
DEG_SPOP_SBC_1
503:507
PCTST
SPOP
0.8959
More...
Q8WW38
Zinc finger protein ZFPM2
DEG_SPOP_SBC_1
769:773
PCTST
SPOP
0.5014
More...
Q9Y2X3
Nucleolar protein 58
DEG_SPOP_SBC_1
506:510
PCTST
SPOP
0.9963
More...