DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
CPH
CGC
Degron:
PCTST
Uniprot ID:
Q8IUM7
Source protein:
Neuronal PAS domain-containing protein 4
Source gene:
NPAS4
Class:
DEG_SPOP_SBC_1
Location:
503:507
E3 ligase:
SPOP
DEGRON score:
0.8959
ASA_SCORE:
60.3
COIL:
0.9084
CONS_SCORE:
0.3304
DSS_SCORE:
0.549
HELIX:
0.0512
FCONS_SCORE:
1.0948
RIG_SCORE:
0.7423
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.A517S
TCGA-37-A5EL
LUSC
TCGA
PCTST
DEG_SPOP_SBC_1
0.0556
p.A517S
DO223718
LUSC
ICGC
PCTST
DEG_SPOP_SBC_1
0.0556
p.Q500R
TCGA-49-AARN
LUAD
TCGA
PCTST
DEG_SPOP_SBC_1
0.25
p.Q500R
DO218923
LUAD
ICGC
PCTST
DEG_SPOP_SBC_1
0.25
p.T505I
TCGA-50-5931
LUAD
TCGA
PCTST
DEG_SPOP_SBC_1
0.7078
p.T505I
DO24980
LUAD
ICGC
PCTST
DEG_SPOP_SBC_1
0.7078
p.E498V
TCGA-77-7337
LUSC
TCGA
PCTST
DEG_SPOP_SBC_1
0.1944
p.E498V
DO27445
LUSC
ICGC
PCTST
DEG_SPOP_SBC_1
0.1944
p.T516I
TCGA-A5-A0G2
UCEC
TCGA
PCTST
DEG_SPOP_SBC_1
0.0833
p.T516I
DO41235
UCEC
ICGC
PCTST
DEG_SPOP_SBC_1
0.0833
p.E498Q
TCGA-E2-A1LG
BRCA
TCGA
PCTST
DEG_SPOP_SBC_1
0.1944
p.E498Q
DO4018
BRCA
ICGC
PCTST
DEG_SPOP_SBC_1
0.1944
p.P503S
TCGA-EE-A2MR
SKCM
TCGA
PCTST
DEG_SPOP_SBC_1
0.6752
p.P503S
DO37819
SKCM
ICGC
PCTST
DEG_SPOP_SBC_1
0.6752
p.P503L
TCGA-EE-A2MR
SKCM
TCGA
PCTST
DEG_SPOP_SBC_1
0.7582
p.P503L
DO37819
SKCM
ICGC
PCTST
DEG_SPOP_SBC_1
0.7582
p.D499H
DO1094
BRCA
ICGC
PCTST
DEG_SPOP_SBC_1
0.2222
p.P509S
SIDM00545
Melanoma
GDSC
PCTST
DEG_SPOP_SBC_1
0.2778
p.P509S
ACH-000987
Skin Cancer
CCLE
PCTST
DEG_SPOP_SBC_1
0.2778
p.P509S
Mewo
skin
COSMIC
PCTST
DEG_SPOP_SBC_1
0.2778
p.S493L
SIDM01106
Melanoma
GDSC
PCTST
DEG_SPOP_SBC_1
0.0556
p.S493L
ACH-000822
Skin Cancer
CCLE
PCTST
DEG_SPOP_SBC_1
0.0556
p.S493L
SK-MEL-24
skin
COSMIC
PCTST
DEG_SPOP_SBC_1
0.0556
Drug responses associated with NPAS4 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of PCTST
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O14917
Protocadherin-17
DEG_SPOP_SBC_1
1046:1050
PCTST
SPOP
0.9985
More...
Q01851
POU domain, class 4, transcription factor 1
DEG_SPOP_SBC_1
89:93
PCTST
SPOP
0.8746
More...
Q12816
Trophinin
DEG_SPOP_SBC_1
923:927
PCTST
SPOP
0.7275
More...
Q15319
POU domain, class 4, transcription factor 3
DEG_SPOP_SBC_1
87:91
PCTST
SPOP
0.9732
More...
Q6ZN17
Protein lin-28 homolog B
DEG_SPOP_SBC_1
186:190
PCTST
SPOP
0.9507
More...
Q8IUM7
Neuronal PAS domain-containing protein 4
DEG_SPOP_SBC_1
503:507
PCTST
SPOP
0.8959
More...
Q8WW38
Zinc finger protein ZFPM2
DEG_SPOP_SBC_1
769:773
PCTST
SPOP
0.5014
More...
Q9Y2X3
Nucleolar protein 58
DEG_SPOP_SBC_1
506:510
PCTST
SPOP
0.9963
More...