DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
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CGC
Degron:
PDTSS
Uniprot ID:
Q6PCT2
Source protein:
F-box/LRR-repeat protein 19
Source gene:
FBXL19
Class:
DEG_SPOP_SBC_1
Location:
321:325
E3 ligase:
SPOP
DEGRON score:
0.7927
ASA_SCORE:
100.56
COIL:
0.9484
CONS_SCORE:
0.5384
DSS_SCORE:
0.6972
HELIX:
0.0406
FCONS_SCORE:
0.7783
RIG_SCORE:
0.595
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.S326A
TCGA-06-2566
GBM
TCGA
PDTSS
DEG_SPOP_SBC_1
0.3056
p.R319L
TCGA-64-5778
LUAD
TCGA
PDTSS
DEG_SPOP_SBC_1
0.2778
p.D335N
TCGA-AX-A2HC
UCEC
TCGA
PDTSS
DEG_SPOP_SBC_1
0.0556
p.L317M
TCGA-CN-6010
HNSC
TCGA
PDTSS
DEG_SPOP_SBC_1
0.2222
p.S325Y
TCGA-D3-A2JP
SKCM
TCGA
PDTSS
DEG_SPOP_SBC_1
0.712
p.S332F
TCGA-D6-6516
HNSC
TCGA
PDTSS
DEG_SPOP_SBC_1
0.1389
p.S328L
TCGA-S5-A6DX
BLCA
TCGA
PDTSS
DEG_SPOP_SBC_1
0.25
p.S317L
DO219078
BLCA
ICGC
PDTSS
DEG_SPOP_SBC_1
0.2222
p.S317L
DO51259
SKCM
ICGC
PDTSS
DEG_SPOP_SBC_1
0.2222
p.S320L
DO457
BLCA
ICGC
PDTSS
DEG_SPOP_SBC_1
0.3056
p.S320L
DO222875
MELA
ICGC
PDTSS
DEG_SPOP_SBC_1
0.3056
p.E329K
DO3940
BRCA
ICGC
PDTSS
DEG_SPOP_SBC_1
0.2222
p.E329K
NKM-1
haematopoietic_and_lymphoid_tissue
COSMIC
PDTSS
DEG_SPOP_SBC_1
0.2222
p.R331Q
DO222574
BTCA
ICGC
PDTSS
DEG_SPOP_SBC_1
0.1667
p.R335W
DO10550
COAD
ICGC
PDTSS
DEG_SPOP_SBC_1
0.0556
p.S312F
DO15623
HNSC
ICGC
PDTSS
DEG_SPOP_SBC_1
0.0833
p.D315Y
DO229008
LICA
ICGC
PDTSS
DEG_SPOP_SBC_1
0.1667
p.L321V
DO29920
OV
ICGC
PDTSS
DEG_SPOP_SBC_1
0.6765
p.R331W
DO37519
SKCM
ICGC
PDTSS
DEG_SPOP_SBC_1
0.1667
p.R331W
DO37408
SKCM
ICGC
PDTSS
DEG_SPOP_SBC_1
0.1667
p.D315N
DO41572
UCEC
ICGC
PDTSS
DEG_SPOP_SBC_1
0.1667
p.S324T
SIDM00969
Ovarian Carcinoma
GDSC
PDTSS
DEG_SPOP_SBC_1
0.6005
p.S324T
DOV13
ovary
COSMIC
PDTSS
DEG_SPOP_SBC_1
0.6005
p.D333N
SIDM01619
Endometrial Carcinoma
GDSC
PDTSS
DEG_SPOP_SBC_1
0.1111
p.G333V
NCI-H345
lung
COSMIC
PDTSS
DEG_SPOP_SBC_1
0.1111
p.G333W
NCI-H345
lung
COSMIC
PDTSS
DEG_SPOP_SBC_1
0.1111
p.R327G
MDA-MB-415
breast
COSMIC
PDTSS
DEG_SPOP_SBC_1
0.2778
Drug responses associated with FBXL19 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of PDTSS
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
P36956
Sterol regulatory element-binding protein 1
DEG_SPOP_SBC_1
64:68
PDTSS
SPOP
0.999
More...
Q14689
Disco-interacting protein 2 homolog A
DEG_SPOP_SBC_1
134:138
PDTSS
SPOP
0.9885
More...
Q6PCT2
F-box/LRR-repeat protein 19
DEG_SPOP_SBC_1
321:325
PDTSS
SPOP
0.7927
More...
Q96A33
PAT complex subunit CCDC47
DEG_SPOP_SBC_1
109:113
PDTSS
SPOP
0.8466
More...
Q9H9B1
Histone-lysine N-methyltransferase EHMT1
DEG_SPOP_SBC_1
1287:1291
PDTSS
SPOP
0.9968
More...
Q9NSI6
Bromodomain and WD repeat-containing protein 1
DEG_SPOP_SBC_1
2151:2155
PDTSS
SPOP
0.9929
More...
Q9P265
Disco-interacting protein 2 homolog B
DEG_SPOP_SBC_1
142:146
PDTSS
SPOP
0.9674
More...
Q9Y2E4
Disco-interacting protein 2 homolog C
DEG_SPOP_SBC_1
131:135
PDTSS
SPOP
0.9451
More...
Q8N485
Protein limb expression 1 homolog
DEG_SPOP_SBC_1
263:267
PDTSS
SPOP
0.8481
More...