DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
PDTSS
Uniprot ID:
Q8N485
Source protein:
Protein limb expression 1 homolog
Source gene:
LIX1
Class:
DEG_SPOP_SBC_1
Location:
263:267
E3 ligase:
SPOP
DEGRON score:
0.8481
ASA_SCORE:
79.1
COIL:
0.9268
CONS_SCORE:
0.5657
DSS_SCORE:
0.4208
HELIX:
0.0518
FCONS_SCORE:
0.8004
RIG_SCORE:
0.6517
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.D271N
TCGA-FS-A4FD
SKCM
TCGA
PDTSS
DEG_SPOP_SBC_1
0.2222
p.D271N
DO37699
SKCM
ICGC
PDTSS
DEG_SPOP_SBC_1
0.2222
p.P268T
DO222783
BTCA
ICGC
PDTSS
DEG_SPOP_SBC_1
0.3056
p.T276A
DO222880
MELA
ICGC
PDTSS
DEG_SPOP_SBC_1
0.0833
p.P263T
SIDM00120
Prostate Carcinoma
GDSC
PDTSS
DEG_SPOP_SBC_1
0.7031
p.P263T
ACH-000979
Prostate Cancer
CCLE
PDTSS
DEG_SPOP_SBC_1
0.7031
p.P263T
DU-145
prostate
COSMIC
PDTSS
DEG_SPOP_SBC_1
0.7031
Drug responses associated with LIX1 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of PDTSS
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
P36956
Sterol regulatory element-binding protein 1
DEG_SPOP_SBC_1
64:68
PDTSS
SPOP
0.999
More...
Q14689
Disco-interacting protein 2 homolog A
DEG_SPOP_SBC_1
134:138
PDTSS
SPOP
0.9885
More...
Q6PCT2
F-box/LRR-repeat protein 19
DEG_SPOP_SBC_1
321:325
PDTSS
SPOP
0.7927
More...
Q96A33
PAT complex subunit CCDC47
DEG_SPOP_SBC_1
109:113
PDTSS
SPOP
0.8466
More...
Q9H9B1
Histone-lysine N-methyltransferase EHMT1
DEG_SPOP_SBC_1
1287:1291
PDTSS
SPOP
0.9968
More...
Q9NSI6
Bromodomain and WD repeat-containing protein 1
DEG_SPOP_SBC_1
2151:2155
PDTSS
SPOP
0.9929
More...
Q9P265
Disco-interacting protein 2 homolog B
DEG_SPOP_SBC_1
142:146
PDTSS
SPOP
0.9674
More...
Q9Y2E4
Disco-interacting protein 2 homolog C
DEG_SPOP_SBC_1
131:135
PDTSS
SPOP
0.9451
More...
Q8N485
Protein limb expression 1 homolog
DEG_SPOP_SBC_1
263:267
PDTSS
SPOP
0.8481
More...