DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
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Degron:
PESTT
Uniprot ID:
Q9P1Z2
Source protein:
Calcium-binding and coiled-coil domain-containing protein 1
Source gene:
CALCOCO1
Class:
DEG_SPOP_SBC_1
Location:
70:74
E3 ligase:
SPOP
DEGRON score:
0.6507
ASA_SCORE:
78.7
COIL:
0.8396
CONS_SCORE:
0.5765
DSS_SCORE:
0.3148
HELIX:
0.0528
FCONS_SCORE:
0.8856
RIG_SCORE:
0.7029
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.V69M
TCGA-VQ-A8P2
STAD
TCGA
PESTT
DEG_SPOP_SBC_1
0.3056
p.V69M
DO51761
STAD
ICGC
PESTT
DEG_SPOP_SBC_1
0.3056
p.V69M
SIDM01605
Non-Small Cell Lung Carcinoma
GDSC
PESTT
DEG_SPOP_SBC_1
0.3056
p.Q84K
DO228976
LICA
ICGC
PESTT
DEG_SPOP_SBC_1
0.0556
p.D60H
ACH-001645
Skin Cancer
CCLE
PESTT
DEG_SPOP_SBC_1
0.0556
Drug responses associated with CALCOCO1 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of PESTT
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O95359
Transforming acidic coiled-coil-containing protein 2
DEG_SPOP_SBC_1
1956:1960
PESTT
SPOP
0.9713
More...
P15336
Cyclic AMP-dependent transcription factor ATF-2
DEG_SPOP_SBC_1
141:145
PESTT
SPOP
0.838
More...
Q13303
Voltage-gated potassium channel subunit beta-2
DEG_SPOP_SBC_1
3:7
PESTT
SPOP
0.9349
More...
Q14242
P-selectin glycoprotein ligand 1
DEG_SPOP_SBC_1
78:82
PESTT
SPOP
0.9598
More...
Q14687
Genetic suppressor element 1
DEG_SPOP_SBC_1
542:546
PESTT
SPOP
0.997
More...
Q685J3
Mucin-17
DEG_SPOP_SBC_1
201:205
PESTT
SPOP
0.638
More...
Q70CQ4
Ubiquitin carboxyl-terminal hydrolase 31
DEG_SPOP_SBC_1
1019:1023
PESTT
SPOP
0.9963
More...
Q9P1Z2
Calcium-binding and coiled-coil domain-containing protein 1
DEG_SPOP_SBC_1
70:74
PESTT
SPOP
0.6507
More...
Q9ULL0
Acrosomal protein KIAA1210
DEG_SPOP_SBC_1
1104:1108
PESTT
SPOP
0.985
More...