DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
CPH
CGC
Degron:
PQSTS
Uniprot ID:
P07202
Source protein:
Thyroid peroxidase
Source gene:
TPO
Class:
DEG_SPOP_SBC_1
Location:
245:249
E3 ligase:
SPOP
DEGRON score:
0.8902
ASA_SCORE:
56.66
COIL:
0.8518
CONS_SCORE:
0.3927
DSS_SCORE:
0.3362
HELIX:
0.0928
FCONS_SCORE:
0.7305
RIG_SCORE:
0.7419
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.D238N
TCGA-32-4211
GBM
TCGA
PQSTS
DEG_SPOP_SBC_1
0.1389
p.D238N
TCGA-FI-A2D5
UCEC
TCGA
PQSTS
DEG_SPOP_SBC_1
0.1389
p.D238N
DO13647
GBM
ICGC
PQSTS
DEG_SPOP_SBC_1
0.1389
p.D238N
DO41331
UCEC
ICGC
PQSTS
DEG_SPOP_SBC_1
0.1389
p.D258Y
TCGA-78-7155
LUAD
TCGA
PQSTS
DEG_SPOP_SBC_1
0.0833
p.D258Y
DO23590
LUAD
ICGC
PQSTS
DEG_SPOP_SBC_1
0.0833
p.D240Y
TCGA-90-A59Q
LUSC
TCGA
PQSTS
DEG_SPOP_SBC_1
0.1944
p.D240Y
DO50103
LUSC
ICGC
PQSTS
DEG_SPOP_SBC_1
0.1944
p.D258H
TCGA-BA-6871
HNSC
TCGA
PQSTS
DEG_SPOP_SBC_1
0.0833
p.D258H
DO15254
HNSC
ICGC
PQSTS
DEG_SPOP_SBC_1
0.0833
p.G254W
TCGA-D3-A2JB
SKCM
TCGA
PQSTS
DEG_SPOP_SBC_1
0.1944
p.G254W
DO47607
SKCM
ICGC
PQSTS
DEG_SPOP_SBC_1
0.1944
p.G255R
TCGA-D9-A4Z3
SKCM
TCGA
PQSTS
DEG_SPOP_SBC_1
0.1667
p.G255R
DO47555
SKCM
ICGC
PQSTS
DEG_SPOP_SBC_1
0.1667
p.G254R
TCGA-FA-A4XK
DLBC
TCGA
PQSTS
DEG_SPOP_SBC_1
0.1944
p.G254R
TCGA-WS-AB45
COAD
TCGA
PQSTS
DEG_SPOP_SBC_1
0.1944
p.G254R
DO51734
COAD
ICGC
PQSTS
DEG_SPOP_SBC_1
0.1944
p.G254R
DO219886
DLBC
ICGC
PQSTS
DEG_SPOP_SBC_1
0.1944
p.A257S
DO227999
COCA
ICGC
PQSTS
DEG_SPOP_SBC_1
0.1111
p.A257S
DO229505
LAML
ICGC
PQSTS
DEG_SPOP_SBC_1
0.1111
p.S247I
DO233155
GACA
ICGC
PQSTS
DEG_SPOP_SBC_1
0.7341
p.G255V
DO233295
NACA
ICGC
PQSTS
DEG_SPOP_SBC_1
0.1667
p.D240N
DO233033
PEME
ICGC
PQSTS
DEG_SPOP_SBC_1
0.1944
p.D240N
SIDM00619
Thyroid Gland Carcinoma
GDSC
PQSTS
DEG_SPOP_SBC_1
0.1944
p.D240N
ACH-002397
Thyroid Cancer
CCLE
PQSTS
DEG_SPOP_SBC_1
0.1944
p.D240N
KMH-2
thyroid
COSMIC
PQSTS
DEG_SPOP_SBC_1
0.1944
p.P245L
ACH-002396
Bone Cancer
CCLE
PQSTS
DEG_SPOP_SBC_1
0.7582
p.P245L
Sarc9371
bone
COSMIC
PQSTS
DEG_SPOP_SBC_1
0.7582
Drug responses associated with TPO mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of PQSTS
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O14497
AT-rich interactive domain-containing protein 1A
DEG_SPOP_SBC_1
1147:1151
PQSTS
SPOP
0.9731
More...
P07202
Thyroid peroxidase
DEG_SPOP_SBC_1
245:249
PQSTS
SPOP
0.8902
More...
Q13428
Treacle protein
DEG_SPOP_SBC_1
1112:1116
PQSTS
SPOP
0.9975
More...
Q14114
Low-density lipoprotein receptor-related protein 8
DEG_SPOP_SBC_1
738:742
PQSTS
SPOP
0.7494
More...
Q92817
Envoplakin
DEG_SPOP_SBC_1
1806:1810
PQSTS
SPOP
0.681
More...
Q96EP0
E3 ubiquitin-protein ligase RNF31
DEG_SPOP_SBC_1
279:283
PQSTS
SPOP
0.9473
More...
Q9NU22
Midasin
DEG_SPOP_SBC_1
1546:1550
PQSTS
SPOP
0.568
More...
Q9P2H0
Centrosomal protein of 126 kDa
DEG_SPOP_SBC_1
804:808
PQSTS
SPOP
0.9041
More...
Q9HCK1
DBF4-type zinc finger-containing protein 2
DEG_SPOP_SBC_1
502:506
PQSTS
SPOP
0.9849
More...