DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
VATTS
Uniprot ID:
Q13608
Source protein:
Peroxisome assembly factor 2
Source gene:
PEX6
Class:
DEG_SPOP_SBC_1
Location:
570:574
E3 ligase:
SPOP
DEGRON score:
0.5702
ASA_SCORE:
13.46
COIL:
0.286
CONS_SCORE:
0.5836
DSS_SCORE:
0.3459
HELIX:
0.004
FCONS_SCORE:
1.289
RIG_SCORE:
0.789
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.R575Q
TCGA-AJ-A3EK
UCEC
TCGA
VATTS
DEG_SPOP_SBC_1
0.3056
p.R575Q
DO41584
UCEC
ICGC
VATTS
DEG_SPOP_SBC_1
0.3056
p.Q584H
TCGA-C5-A7UC
CESC
TCGA
VATTS
DEG_SPOP_SBC_1
0.0556
p.Q584H
DO49889
CESC
ICGC
VATTS
DEG_SPOP_SBC_1
0.0556
p.T573I
SIDM00669
Pancreatic Carcinoma
GDSC
VATTS
DEG_SPOP_SBC_1
0.7078
p.T573I
SIDM00429
B-Lymphoblastic Leukemia
GDSC
VATTS
DEG_SPOP_SBC_1
0.7078
p.T573I
SIDM00887
Other Solid Cancers
GDSC
VATTS
DEG_SPOP_SBC_1
0.7078
p.D582N
ACH-000923
Lymphoma
CCLE
VATTS
DEG_SPOP_SBC_1
0.1111
Drug responses associated with PEX6 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of VATTS
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O60675
Transcription factor MafK
DEG_SPOP_SBC_1
131:135
VATTS
SPOP
0.7845
More...
Q13608
Peroxisome assembly factor 2
DEG_SPOP_SBC_1
570:574
VATTS
SPOP
0.5702
More...
Q14157
Ubiquitin-associated protein 2-like
DEG_SPOP_SBC_1
780:784
VATTS
SPOP
0.7169
More...
Q14160
Protein scribble homolog
DEG_SPOP_SBC_1
969:973
VATTS
SPOP
0.9963
More...
Q6PI98
INO80 complex subunit C
DEG_SPOP_SBC_1
8:12
VATTS
SPOP
0.9604
More...
Q8IWV7
E3 ubiquitin-protein ligase UBR1
DEG_SPOP_SBC_1
996:1000
VATTS
SPOP
0.5572
More...
Q8WXI7
Mucin-16
DEG_SPOP_SBC_1
7777:7781
VATTS
SPOP
0.9972
More...
Q9Y6J0
Calcineurin-binding protein cabin-1
DEG_SPOP_SBC_1
345:349
VATTS
SPOP
0.7691
More...
Q2KHR3
Glutamine and serine-rich protein 1
DEG_SPOP_SBC_1
1268:1272
VATTS
SPOP
0.9771
More...