DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
CPH
CGC
Degron:
VPTTS
Uniprot ID:
Q8TDF5
Source protein:
Neuropilin and tolloid-like protein 1
Source gene:
NETO1
Class:
DEG_SPOP_SBC_1
Location:
498:502
E3 ligase:
SPOP
DEGRON score:
0.9808
ASA_SCORE:
65.6
COIL:
0.8208
CONS_SCORE:
0.3271
DSS_SCORE:
0.418
HELIX:
0.0648
FCONS_SCORE:
0.8918
RIG_SCORE:
0.7413
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.P499T
TCGA-17-Z055
LUAD
TCGA
VPTTS
DEG_SPOP_SBC_1
0.5919
p.D509N
TCGA-18-3409
LUSC
TCGA
VPTTS
DEG_SPOP_SBC_1
0.1389
p.D509N
TCGA-19-5956
GBM
TCGA
VPTTS
DEG_SPOP_SBC_1
0.1389
p.D509N
TCGA-AP-A0LM
UCEC
TCGA
VPTTS
DEG_SPOP_SBC_1
0.1389
p.D509N
TCGA-EB-A51B
SKCM
TCGA
VPTTS
DEG_SPOP_SBC_1
0.1389
p.D509N
TCGA-EE-A2MS
SKCM
TCGA
VPTTS
DEG_SPOP_SBC_1
0.1389
p.D509N
TCGA-OR-A5KY
ACC
TCGA
VPTTS
DEG_SPOP_SBC_1
0.1389
p.D509N
SIDM00003
Melanoma
GDSC
VPTTS
DEG_SPOP_SBC_1
0.1389
p.D509N
ACH-002159
Skin Cancer
CCLE
VPTTS
DEG_SPOP_SBC_1
0.1389
p.D509N
M14
skin
COSMIC
VPTTS
DEG_SPOP_SBC_1
0.1389
p.R507I
TCGA-77-7465
LUSC
TCGA
VPTTS
DEG_SPOP_SBC_1
0.1944
p.D488N
TCGA-A2-A25A
BRCA
TCGA
VPTTS
DEG_SPOP_SBC_1
0.0556
p.R504M
TCGA-B5-A3FA
UCEC
TCGA
VPTTS
DEG_SPOP_SBC_1
0.2778
p.P499L
TCGA-CM-6171
COAD
TCGA
VPTTS
DEG_SPOP_SBC_1
0.6471
p.H508L
TCGA-CR-7402
HNSC
TCGA
VPTTS
DEG_SPOP_SBC_1
0.1667
p.V498M
TCGA-DA-A1HV
SKCM
TCGA
VPTTS
DEG_SPOP_SBC_1
0.7208
p.E496K
TCGA-DA-A3F3
SKCM
TCGA
VPTTS
DEG_SPOP_SBC_1
0.2778
p.E496K
TCGA-EO-A22U
UCEC
TCGA
VPTTS
DEG_SPOP_SBC_1
0.2778
p.H508Q
TCGA-E2-A1IH
BRCA
TCGA
VPTTS
DEG_SPOP_SBC_1
0.1667
p.E494K
TCGA-EE-A20C
SKCM
TCGA
VPTTS
DEG_SPOP_SBC_1
0.2222
p.E494K
TCGA-EE-A2GJ
SKCM
TCGA
VPTTS
DEG_SPOP_SBC_1
0.2222
p.T500A
TCGA-IN-7806
STAD
TCGA
VPTTS
DEG_SPOP_SBC_1
0.7139
p.H507Q
DO2983
BRCA
ICGC
VPTTS
DEG_SPOP_SBC_1
0.1944
p.P498L
DO8151
COAD
ICGC
VPTTS
DEG_SPOP_SBC_1
0.7582
p.V511I
DO228094
EOPC
ICGC
VPTTS
DEG_SPOP_SBC_1
0.0833
p.V511I
DO229053
LICA
ICGC
VPTTS
DEG_SPOP_SBC_1
0.0833
p.D508N
DO13863
GBM
ICGC
VPTTS
DEG_SPOP_SBC_1
0.1667
p.D508N
DO26444
LUSC
ICGC
VPTTS
DEG_SPOP_SBC_1
0.1667
p.D508N
DO222753
MELA
ICGC
VPTTS
DEG_SPOP_SBC_1
0.1667
p.D508N
DO37567
SKCM
ICGC
VPTTS
DEG_SPOP_SBC_1
0.1667
p.D508N
DO47343
SKCM
ICGC
VPTTS
DEG_SPOP_SBC_1
0.1667
p.D508N
DO43306
UCEC
ICGC
VPTTS
DEG_SPOP_SBC_1
0.1667
p.H507L
DO15727
HNSC
ICGC
VPTTS
DEG_SPOP_SBC_1
0.1944
p.R506I
DO27699
LUSC
ICGC
VPTTS
DEG_SPOP_SBC_1
0.2222
p.E493K
DO222775
MELA
ICGC
VPTTS
DEG_SPOP_SBC_1
0.1944
p.E493K
DO37746
SKCM
ICGC
VPTTS
DEG_SPOP_SBC_1
0.1944
p.E493K
DO47665
SKCM
ICGC
VPTTS
DEG_SPOP_SBC_1
0.1944
p.Q512H
DO46657
PAAD
ICGC
VPTTS
DEG_SPOP_SBC_1
0.0556
p.T500S
DO51527
PACA
ICGC
VPTTS
DEG_SPOP_SBC_1
0.6005
p.V497M
DO37659
SKCM
ICGC
VPTTS
DEG_SPOP_SBC_1
0.3056
p.E495K
DO37607
SKCM
ICGC
VPTTS
DEG_SPOP_SBC_1
0.25
p.E495K
DO43755
UCEC
ICGC
VPTTS
DEG_SPOP_SBC_1
0.25
p.T499A
DO38831
STAD
ICGC
VPTTS
DEG_SPOP_SBC_1
0.7139
p.R506K
DO229275
THCA
ICGC
VPTTS
DEG_SPOP_SBC_1
0.2222
p.R503M
DO52402
UCEC
ICGC
VPTTS
DEG_SPOP_SBC_1
0.3056
p.V512I
SIDM00450
Acute Myeloid Leukemia
GDSC
VPTTS
DEG_SPOP_SBC_1
0.0556
p.V512I
SIDM00435
Acute Myeloid Leukemia
GDSC
VPTTS
DEG_SPOP_SBC_1
0.0556
p.V512I
SIDM00234
Other Solid Cancers
GDSC
VPTTS
DEG_SPOP_SBC_1
0.0556
p.V512I
SIDM00352
Ovarian Carcinoma
GDSC
VPTTS
DEG_SPOP_SBC_1
0.0556
p.V512I
SIDM00374
B-Cell Non-Hodgkin's Lymphoma
GDSC
VPTTS
DEG_SPOP_SBC_1
0.0556
p.V512I
SIDM00604
Oral Cavity Carcinoma
GDSC
VPTTS
DEG_SPOP_SBC_1
0.0556
p.V512I
SIDM00026
Other Solid Cancers
GDSC
VPTTS
DEG_SPOP_SBC_1
0.0556
p.V512I
SIDM01682
Gastric Carcinoma
GDSC
VPTTS
DEG_SPOP_SBC_1
0.0556
p.V512I
SIDM01660
Kidney Carcinoma
GDSC
VPTTS
DEG_SPOP_SBC_1
0.0556
p.V512I
SIDM01447
Glioblastoma
GDSC
VPTTS
DEG_SPOP_SBC_1
0.0556
p.V512I
SIDM00959
Acute Myeloid Leukemia
GDSC
VPTTS
DEG_SPOP_SBC_1
0.0556
p.V512I
SIDM00016
Neuroblastoma
GDSC
VPTTS
DEG_SPOP_SBC_1
0.0556
p.I495N
SIDM00779
Colorectal Carcinoma
GDSC
VPTTS
DEG_SPOP_SBC_1
0.25
p.I495N
ACH-000491
Colon/Colorectal Cancer
CCLE
VPTTS
DEG_SPOP_SBC_1
0.25
p.I495N
NCI-H716
large_intestine
COSMIC
VPTTS
DEG_SPOP_SBC_1
0.25
Drug responses associated with NETO1 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of VPTTS
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O43314
Inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 2
DEG_SPOP_SBC_1
370:374
VPTTS
SPOP
0.8558
More...
P98088
Mucin-5AC
DEG_SPOP_SBC_1
2399:2403
VPTTS
SPOP
0.8982
More...
P98088
Mucin-5AC
DEG_SPOP_SBC_1
2495:2499
VPTTS
SPOP
0.7928
More...
P98088
Mucin-5AC
DEG_SPOP_SBC_1
2575:2579
VPTTS
SPOP
0.5198
More...
P98088
Mucin-5AC
DEG_SPOP_SBC_1
2671:2675
VPTTS
SPOP
0.9448
More...
P98088
Mucin-5AC
DEG_SPOP_SBC_1
2839:2843
VPTTS
SPOP
0.9083
More...
P98088
Mucin-5AC
DEG_SPOP_SBC_1
2935:2939
VPTTS
SPOP
0.9476
More...
P98088
Mucin-5AC
DEG_SPOP_SBC_1
2951:2955
VPTTS
SPOP
0.798
More...
P98088
Mucin-5AC
DEG_SPOP_SBC_1
2959:2963
VPTTS
SPOP
0.6777
More...
P98088
Mucin-5AC
DEG_SPOP_SBC_1
3071:3075
VPTTS
SPOP
0.6444
More...
P98088
Mucin-5AC
DEG_SPOP_SBC_1
3159:3163
VPTTS
SPOP
0.5848
More...
P98088
Mucin-5AC
DEG_SPOP_SBC_1
3191:3195
VPTTS
SPOP
0.7503
More...
P98088
Mucin-5AC
DEG_SPOP_SBC_1
3922:3926
VPTTS
SPOP
0.7805
More...
P98088
Mucin-5AC
DEG_SPOP_SBC_1
4228:4232
VPTTS
SPOP
0.9669
More...
P98088
Mucin-5AC
DEG_SPOP_SBC_1
4300:4304
VPTTS
SPOP
0.9127
More...
P98088
Mucin-5AC
DEG_SPOP_SBC_1
4324:4328
VPTTS
SPOP
0.7065
More...
P98088
Mucin-5AC
DEG_SPOP_SBC_1
4444:4448
VPTTS
SPOP
0.8216
More...
P98088
Mucin-5AC
DEG_SPOP_SBC_1
4516:4520
VPTTS
SPOP
0.9642
More...
P98088
Mucin-5AC
DEG_SPOP_SBC_1
4596:4600
VPTTS
SPOP
0.5935
More...
Q05707
Collagen alpha-1
DEG_SPOP_SBC_1
725:729
VPTTS
SPOP
0.9814
More...
Q14004
Cyclin-dependent kinase 13
DEG_SPOP_SBC_1
1284:1288
VPTTS
SPOP
0.9896
More...
Q6PFW1
Inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 1
DEG_SPOP_SBC_1
381:385
VPTTS
SPOP
0.942
More...
Q6ZNA4
E3 ubiquitin-protein ligase Arkadia
DEG_SPOP_SBC_1
395:399
VPTTS
SPOP
0.9894
More...
Q8N5I2
Arrestin domain-containing protein 1
DEG_SPOP_SBC_1
393:397
VPTTS
SPOP
0.995
More...
Q8TDF5
Neuropilin and tolloid-like protein 1
DEG_SPOP_SBC_1
498:502
VPTTS
SPOP
0.9808
More...
Q8WXI7
Mucin-16
DEG_SPOP_SBC_1
13290:13294
VPTTS
SPOP
0.9863
More...
Q8WXI7
Mucin-16
DEG_SPOP_SBC_1
13602:13606
VPTTS
SPOP
0.9442
More...
Q8WXI7
Mucin-16
DEG_SPOP_SBC_1
13913:13917
VPTTS
SPOP
0.8716
More...
Q96AG3
Mitochondrial outer membrane protein SLC25A46
DEG_SPOP_SBC_1
66:70
VPTTS
SPOP
0.9982
More...
Q96T58
Msx2-interacting protein
DEG_SPOP_SBC_1
3459:3463
VPTTS
SPOP
0.9438
More...
Q9HBW1
Leucine-rich repeat-containing protein 4
DEG_SPOP_SBC_1
476:480
VPTTS
SPOP
0.9425
More...
Q9NV92
NEDD4 family-interacting protein 2
DEG_SPOP_SBC_1
158:162
VPTTS
SPOP
0.9979
More...
Q9UGU0
Transcription factor 20
DEG_SPOP_SBC_1
1828:1832
VPTTS
SPOP
0.5647
More...
Q9NU02
Ankyrin repeat and EF-hand domain-containing protein 1
DEG_SPOP_SBC_1
687:691
VPTTS
SPOP
0.9845
More...
Q9P1Y6
PHD and RING finger domain-containing protein 1
DEG_SPOP_SBC_1
257:261
VPTTS
SPOP
0.9684
More...