DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
CPH
CGC
Degron:
DSGSSS
Uniprot ID:
Q9Y4G8
Source protein:
Rap guanine nucleotide exchange factor 2
Source gene:
RAPGEF2
Class:
DEG_SCF_TRCP1_1
Location:
53:58
E3 ligase:
BTRC
DEGRON score:
0.9394
ASA_SCORE:
71.3667
COIL:
0.8568
CONS_SCORE:
0.4144
DSS_SCORE:
0.4638
HELIX:
0.0697
FCONS_SCORE:
1.1319
RIG_SCORE:
0.5886
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.S56I
TCGA-AG-A002
READ
TCGA
DSGSSS
DEG_SCF_TRCP1_1
0.623
p.G55A
TCGA-DD-A1EC
LIHC
TCGA
DSGSSS
DEG_SCF_TRCP1_1
0.754
p.G55A
DO22982
LIHC
ICGC
DSGSSS
DEG_SCF_TRCP1_1
0.754
p.S57N
TCGA-L5-A8NM
ESCA
TCGA
DSGSSS
DEG_SCF_TRCP1_1
0.5958
p.S58C
SIDM02016
Colorectal Carcinoma
GDSC
DSGSSS
DEG_SCF_TRCP1_1
0.8652
p.A65G
SIDM00074
Burkitt's Lymphoma
GDSC
DSGSSS
DEG_SCF_TRCP1_1
0.1389
p.A65G
BL-70
haematopoietic_and_lymphoid_tissue
COSMIC
DSGSSS
DEG_SCF_TRCP1_1
0.1389
p.S54F
SIDM00007
Other Solid Cancers
GDSC
DSGSSS
DEG_SCF_TRCP1_1
0.7982
p.S54F
ACH-001550
Skin Cancer
CCLE
DSGSSS
DEG_SCF_TRCP1_1
0.7982
p.S54F
MCC13
skin
COSMIC
DSGSSS
DEG_SCF_TRCP1_1
0.7982
p.I50V
SIDM01608
Endometrial Carcinoma
GDSC
DSGSSS
DEG_SCF_TRCP1_1
0.25
p.I50V
ACH-000990
Endometrial/Uterine Cancer
CCLE
DSGSSS
DEG_SCF_TRCP1_1
0.25
Drug responses associated with RAPGEF2 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of DSGSSS
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q13428
Treacle protein
DEG_SCF_TRCP1_1
931:936
DSGSSS
BTRC
0.9956
More...
Q8IYG6
Leucine-rich repeat-containing protein 56
DEG_SCF_TRCP1_1
460:465
DSGSSS
BTRC
0.9835
More...
Q96S38
Ribosomal protein S6 kinase delta-1
DEG_SCF_TRCP1_1
499:504
DSGSSS
BTRC
0.9876
More...
Q9C0H9
SRC kinase signaling inhibitor 1
DEG_SCF_TRCP1_1
512:517
DSGSSS
BTRC
0.9672
More...
Q9H7S9
Zinc finger protein 703
DEG_SCF_TRCP1_1
169:174
DSGSSS
BTRC
0.9995
More...
Q9NQ76
Matrix extracellular phosphoglycoprotein
DEG_SCF_TRCP1_1
515:520
DSGSSS
BTRC
0.9943
More...
Q9Y4G8
Rap guanine nucleotide exchange factor 2
DEG_SCF_TRCP1_1
53:58
DSGSSS
BTRC
0.9394
More...
Q9C0H5
Rho GTPase-activating protein 39
DEG_SCF_TRCP1_1
168:173
DSGSSS
BTRC
0.9988
More...
Q86VQ1
Glucocorticoid-induced transcript 1 protein
DEG_SCF_TRCP1_1
393:398
DSGSSS
BTRC
0.9577
More...